Protein Concepts Dictionary

Tableau information

Concept source:  d2j8mb_  amino acid (a.a.) range (LEU13)(ASP166)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HHEEHEHEHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LEU13)   (GLY25) H1
	   (LEU38)   (GLY52) H2
	   (GLY52)   (ALA58) E3
	   (LEU66)   (GLY72) E4
	   (GLU78)   (THR83) H5
	   (GLU85)   (ARG91) E6
	   (GLY98)  (GLY115) H7
	  (HIS117)  (ILE123) E8
	  (ASN127)  (GLY138) H9
	  (GLY138)  (GLN147) E10
	  (VAL148)  (PHE152) E11
	  (ARG154)  (ASP166) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
H2      111.3°   H2                                                                           
E3       81.5° -125.9°   E3                                                                    
E4      -84.5°   52.5°  163.5°   E4                                                             
H5      100.3°  -95.3°   31.5° -145.9°   H5                                                      
E6       94.2° -136.1°  -22.2°  170.4°  -43.6°   E6                                               
H7     -113.8°   37.9°  159.9°  -29.7° -128.9°  151.6°   H7                                        
E8       48.6°  157.9°  -50.7°  123.2°  -81.7°  -51.2°  149.4°   E8                                 
H9     -122.8°  -14.9°  115.2°  -66.0°   83.8°  122.0°  -46.1° -160.8°   H9                          
E10     -47.1°  132.8°  -95.3°   81.3° -126.4°  -90.9°  104.6°  -44.7°  147.2°   E10                  
E11     -93.9° -148.9°  -38.2°  152.5°  -61.4°  -17.9°  144.6°  -45.9°  134.0°  -77.8°   E11           
E12     133.7°  -25.7°  110.3°  -73.8°   79.0°  113.3°  -49.9°  160.6°   11.4°  154.4°  123.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2jlmb1 :    (HIS20)  (ASP174)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Acinetobacter baylyi [TaxId: 202950]
 d3dr8b_ :    (CYS11)  (ASP163)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |automated matches |Salmonella typhimurium [TaxId: 90371]
 d1yvob_ :    (LEU13)  (ASP166)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3dr6b_ :    (CYS11)  (ASP163)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |automated matches |Salmonella typhimurium [TaxId: 90371]
 d2j8na_ :    (LEU13)  (ASP166)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein PA4866 |Pseudomonas aeruginosa [TaxId: 287]
 d2bl1a1 :    (LEU13)  (ASP166)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein PA4866 |Pseudomonas aeruginosa [TaxId: 287]
 d2j8mb_ :    (LEU13)  (ASP166)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein PA4866 |Pseudomonas aeruginosa [TaxId: 287]
 d3dr8a1 :    (CYS11)  (ASP163)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |automated matches |Salmonella typhimurium [TaxId: 90371]
 d4mbua_ :    (LEU10)  (LYS162)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
 d2jlmf1 :    (HIS20)  (ASP174)   [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Acinetobacter baylyi [TaxId: 202950]
 d3dr6a_ :    (CYS11)  (ASP163)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |automated matches |Salmonella typhimurium [TaxId: 90371]
 d1yvoa1 :    (LEU13)  (ASP166)   [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein PA4866 |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.108