Protein Concepts Dictionary

Tableau information

Concept source:  d2bngb_  amino acid (a.a.) range (GLU13)(PHE124)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HHEEHEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLU13)   (ASN30) H1
	   (PHE33)   (ALA39) H2
	   (ASP43)   (ASN48) E3
	   (SER52)   (GLY56) E4
	   (GLY56)   (GLN68) H5
	   (GLY72)   (HIS78) E6
	   (HIS78)   (GLY84) E7
	   (ALA85)   (GLU90) E8
	   (ARG91)   (ILE97) E9
	   (PRO99)  (TRP105) E10
	  (TRP105)  (ASP114) E11
	  (THR118)  (PHE124) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
H2     -144.0°   H2                                                                           
E3      -60.7°  116.1°   E3                                                                    
E4      111.6°  -79.7°  162.5°   E4                                                             
H5       34.7°  164.4°   48.3°  115.8°   H5                                                      
E6     -146.3°   59.2°   88.2°  -94.4° -114.8°   E6                                               
E7      138.5°   28.0°  143.8°  -52.9° -167.3°  -74.3°   E7                                        
E8      -49.7° -132.6°  -16.5°  146.7°   31.8°   96.9°  160.3°   E8                                 
E9       22.1° -130.3°  -81.3°   94.2°   54.1°  168.4° -117.2°  -71.7°   E9                          
E10     157.8°   29.8°  101.0°  -89.5° -141.3°  -29.6°   50.2° -115.0°  158.3°   E10                  
E11     123.4°   61.8°  175.7°  -18.2° -133.8°  -87.5°  -34.6°  164.9°  102.9°  -75.4°   E11           
E12     -63.0°  112.7°    3.4°  165.7°   51.7°   86.6°  140.4°  -20.0°  -83.2°   98.2°  173.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1nu3b_ :    (THR22)  (PHE134)   [view usage] : d.17.4.8 |Cystatin-like |NTF2-like |Limonene-1,2-epoxide hydrolase-like |Limonene-1,2-epoxide hydrolase |Rhodococcus erythropolis [TaxId: 1833]
 d2bngc_ :    (GLU13)  (PHE124)   [view usage] : d.17.4.8 |Cystatin-like |NTF2-like |Limonene-1,2-epoxide hydrolase-like |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3mytb_ :     (THR3)  (PHE116)   [view usage] : d.17.4.3 |Cystatin-like |NTF2-like |Ketosteroid isomerase-like |Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI |Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]
 d2bnga1 :    (GLU13)  (PHE124)   [view usage] : d.17.4.8 |Cystatin-like |NTF2-like |Limonene-1,2-epoxide hydrolase-like |Uncharacterized protein Mb2760 |Mycobacterium tuberculosis [TaxId: 1773]
 d1nwwb_ :    (THR22)  (PHE134)   [view usage] : d.17.4.8 |Cystatin-like |NTF2-like |Limonene-1,2-epoxide hydrolase-like |Limonene-1,2-epoxide hydrolase |Rhodococcus erythropolis [TaxId: 1833]
 d2bngb_ :    (GLU13)  (PHE124)   [view usage] : d.17.4.8 |Cystatin-like |NTF2-like |Limonene-1,2-epoxide hydrolase-like |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d1nu3a_ :    (THR22)  (PHE134)   [view usage] : d.17.4.8 |Cystatin-like |NTF2-like |Limonene-1,2-epoxide hydrolase-like |Limonene-1,2-epoxide hydrolase |Rhodococcus erythropolis [TaxId: 1833]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.17