Protein Concepts Dictionary

Tableau information

Concept source:  d2quyf_  amino acid (a.a.) range (VAL105)(ARG231)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HHEEEEEHEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (VAL105)  (ASN112) H1
	  (THR115)  (SER125) H2
	  (SER125)  (ASN130) E3
	  (LEU142)  (ASP148) E4
	  (GLU152)  (PRO158) E5
	  (GLY162)  (LYS168) E6
	  (GLY171)  (ALA175) E7
	  (TYR179)  (ILE190) H8
	  (GLN198)  (GLY203) E9
	  (ASP204)  (PRO209) E10
	  (GLY213)  (LEU219) H11
	  (PRO225)  (ARG231) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
H2      128.6°   H2                                                                           
E3      159.8°  -64.3°   E3                                                                    
E4      -16.9°  145.3°  146.2°   E4                                                             
E5      144.9°   16.4°  -49.8°  161.7°   E5                                                      
E6      -47.4° -175.8°  119.8°  -30.8°  167.3°   E6                                               
E7      162.4°   36.5°  -28.1° -169.8°   21.8°  147.7°   E7                                        
H8      -90.1° -138.1°   84.3°  -74.8°  122.4°   45.0°  107.3°   H8                                 
E9      139.0°  -83.8°  -48.3°  127.2°  -68.5°   99.2°  -58.0°   54.3°   E9                          
E10     -69.7°   74.0°  104.5°  -79.8°   86.9° -104.0°   93.8° -144.2°  151.3°   E10                  
H11     121.8°  -12.8°  -73.9°  138.5°  -24.1°  164.0°  -45.8°  136.8°   84.0°   78.4°   H11           
H12     -31.5° -160.0°  134.7°  -15.0° -175.4°  -15.9°  162.8°  -59.9° -113.2°  -92.4°  151.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2rf8b_ :   (PHE105)  (ALA260)   [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
 d2rf8a_ :   (PHE105)  (ALA260)   [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
 d2pvaa_ :   (ASN101)  (TYR238)   [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |Penicillin V acylase |Bacillus sphaericus [TaxId: 1421]
 d2rg2a_ :   (PHE105)  (ALA260)   [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
 d2z71c_ :   (ASN101)  (ARG231)   [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
 d2z71a_ :   (ILE106)  (TYR238)   [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
 d2quyf_ :   (VAL105)  (ARG231)   [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Bacillus sphaericus [TaxId: 1421]
 d2quya_ :   (VAL105)  (ARG231)   [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Bacillus sphaericus [TaxId: 1421]
 d3pvaa_ :   (ASN101)  (ARG231)   [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |Penicillin V acylase |Bacillus sphaericus [TaxId: 1421]
 d2iwma_ :   (VAL108)  (ARG234)   [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
 d2iwmc_ :   (VAL108)  (TYR241)   [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
 d2rlca_ :   (PHE105)  (ALA260)   [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.153