Protein Concepts Dictionary

Tableau information

Concept source:  d4f4ra2  amino acid (a.a.) range (LYS193)(VAL351)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HEHHEHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LYS193)  (GLY203) H1
	  (HIS207)  (HIS213) E2
	  (PRO218)  (VAL228) H3
	  (ASN244)  (HIS254) H4
	  (THR257)  (GLY262) E5
	  (SER267)  (GLN278) H6
	  (ASP281)  (MET285) E7
	  (GLY292)  (SER304) H8
	  (ARG309)  (PRO315) E9
	  (PRO320)  (TRP332) H10
	  (GLY337)  (PRO343) E11
	  (THR345)  (VAL351) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
E2      163.0°   E2                                                                           
H3      -24.9°  161.0°   H3                                                                    
H4      -55.7°  137.5°  -32.2°   H4                                                             
E5      109.8°  -55.5°  132.3° -164.3°   E5                                                      
H6      -70.1°  126.6°  -52.5°  -26.6° -162.6°   H6                                               
E7      105.9°  -57.4°  124.0°  151.4°  -17.2° -175.9°   E7                                        
H8      -83.1°  113.8°  -65.7°  -37.8°  155.5°  -13.3°  170.2°   H8                                 
E9      103.8°  -61.9°  105.9°  117.1°  -57.1°  140.2°  -40.6°  141.9°   E9                          
H10     -64.7°  130.0°  -62.3°  -54.4°  128.3°  -35.0°  142.9°  -37.8° -168.0°   H10                  
E11      93.8°  -72.5°   95.0°  108.1°  -64.1°  133.0°  -47.0°  137.8°   10.9° -157.2°   E11           
H12     -79.8°   95.1° -102.8° -122.4°   53.8° -110.4°   67.5° -111.3°  106.8°  -75.5°  109.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2gl5a1 :   (LEU195)  (LYS356)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Putative dehydratase protein STM2273 |Salmonella typhimurium [TaxId: 90371]
 d4il2b2 :   (LYS205)  (PRO365)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |D-mannonate dehydratase |Escherichia coli [TaxId: 199310]
 d3vcna2 :   (THR184)  (PHE352)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Caulobacter crescentus [TaxId: 155892]
 d1yeyc1 :   (ASN224)  (LEU392)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |RTS beta protein |Xanthomonas campestris pv. campestris [TaxId: 340]
 d4e6ma2 :   (LEU195)  (LYS356)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Putative dehydratase protein STM2273 |Salmonella enterica [TaxId: 90371]
 d4fi4a2 :   (THR184)  (PHE352)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Caulobacter sp. [TaxId: 366602]
 d2qjja2 :   (THR183)  (VAL350)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Novosphingobium aromaticivorans [TaxId: 48935]
 d2o56a2 :   (THR192)  (THR359)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Salmonella typhimurium [TaxId: 99287]
 d3thua2 :   (VAL191)  (PHE352)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Sphingomonas sp. [TaxId: 314266]
 d4f4ra2 :   (LYS193)  (VAL351)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
 d1yeyb1 :   (ASN224)  (LEU392)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |RTS beta protein |Xanthomonas campestris pv. campestris [TaxId: 340]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1