Protein Concepts Dictionary

Tableau information

Concept source:  d1n7xa_  amino acid (a.a.) range (GLY187)(GLU328)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HEHHEEHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY187)  (GLY198) H1
	  (ASP201)  (VAL205) E2
	  (SER208)  (LEU214) H3
	  (ASN216)  (GLN222) H4
	  (GLN222)  (LEU228) E5
	  (ASN230)  (PRO234) E6
	  (TYR238)  (HIS242) H7
	  (ALA244)  (ARG254) E8
	  (LYS259)  (HIS273) H9
	  (GLY301)  (PRO306) E10
	  (ASP310)  (GLY316) H11
	  (GLY316)  (GLU328) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
E2     -161.3°   E2                                                                           
H3      -67.3°  105.5°   H3                                                                    
H4       74.6° -119.6°  130.6°   H4                                                             
E5      114.9°  -74.2°  173.4°  -47.4°   E5                                                      
E6      -96.7°   70.3°  -38.8° -169.3°  143.3°   E6                                               
H7       98.7°  -98.1°  135.2°   27.1°   39.3° -156.0°   H7                                        
E8      135.2°  -56.2°  -81.7°  106.2°   92.8°  -75.5°   80.6°   E8                                 
H9       55.7° -106.8°   44.1° -127.8° -142.5°   46.4°  154.1°  119.4°   H9                          
E10     131.2°   62.1° -154.4°  -57.6°   20.1°  131.9°  -38.5°  -72.8° -157.0°   E10                  
H11     -48.9°  113.9°   79.8°  -98.2° -106.4°   79.9° -124.1°  155.3°  -37.7°  125.2°   H11           
H12      58.3° -140.3°  -88.3°   44.0°   88.0° -126.1°   51.2°  -90.5°  108.7°  -89.5°  105.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1biya1 :   (GLY191)  (GLU333)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]
 d1sqya1 :   (SER191)  (LEU331)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
 d1ce2a1 :   (GLY191)  (GLU333)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]
 d3qyta2 :   (GLY516)  (LEU662)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1n7xa_ :   (GLY187)  (GLU328)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
 d1dota2 :   (GLY523)  (THR670)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Duck (Anas platyrhynchos) [TaxId: 8839]
 d4h0wa2 :   (GLY516)  (ASN661)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1n7wa_ :   (GLY187)  (GLU328)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
 d1a8ea_ :   (GLY187)  (GLU328)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
 d1b1xa1 :   (GLY191)  (GLU333)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Horse (Equus caballus) [TaxId: 9796]
 d2bjjx1 :   (SER192)  (ASN331)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1d4na_ :   (GLY187)  (GLU328)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
 d2o84x_ :   (GLY187)  (GLU328)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
 d1jnfa1 :   (GLY187)  (GLY329)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
 d1b3ea_ :   (GLY187)  (GLY329)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
 d1f9ba1 :   (GLY191)  (GLU333)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Horse (Equus caballus) [TaxId: 9796]
 d1b0la1 :   (SER191)  (ASN330)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
 d1lfia1 :   (SER191)  (ASN330)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
 d1lfga1 :   (SER191)  (LYS333)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Human (Homo sapiens) [TaxId: 9606]
 d1blfa1 :   (GLY191)  (GLU333)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Lactoferrin |Cow (Bos taurus) [TaxId: 9913]
 d1h76a2 :   (GLY525)  (ARG671)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Pig (Sus scrofa) [TaxId: 9823]
 d1dtga_ :   (GLY187)  (GLU328)   [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94