Protein Concepts Dictionary

Tableau information

Concept source:  d2pd5a_  amino acid (a.a.) range (ASN136)(SER290)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASN136)  (GLY151) H1
	  (LYS154)  (ASN160) E2
	  (ASN162)  (LYS172) H3
	  (ALA180)  (GLU185) E4
	  (LYS194)  (GLY203) H5
	  (VAL205)  (SER210) E6
	  (SER226)  (ASP230) H7
	  (ASP230)  (ASN241) H8
	  (THR244)  (ASN256) H9
	  (VAL258)  (LYS262) E10
	  (THR265)  (ASP277) H11
	  (SER281)  (SER290) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
E2      155.9°   E2                                                                           
H3      -57.3°  146.8°   H3                                                                    
E4      123.8°  -33.5°  168.1°   E4                                                             
H5      -43.3°  159.1°   17.6° -167.0°   H5                                                      
E6      110.3°  -50.2°  150.2°  -19.8°  150.3°   E6                                               
H7      -79.6°   87.5° -108.0°   83.4°  -92.9°  -94.5°   H7                                        
H8      -28.5°  136.1°  -71.5° -115.3°  -54.0° -111.2°  -51.3°   H8                                 
H9      -87.4°  113.7°  -38.8°  146.9°  -45.4°  161.8°   92.8°   86.3°   H9                          
E10      93.0°  -72.4°  125.2°  -44.9°  126.6°  -25.2° -110.0° -104.8°  157.0°   E10                  
H11     -86.1°  101.0°  -70.8°  120.5°  -64.3°  138.5°   49.8°   66.1°  -43.4°  159.6°   H11           
H12     137.2°  -54.5°  103.3°   67.6°  120.6°   66.2°  141.7° -165.3°  -98.2°   66.4° -126.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1vp5a_ :   (HIS119)  (THR261)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |2,5-diketo-D-gluconic acid reductase A |Thermotoga maritima [TaxId: 2336]
 d3wg6a_ :   (ASP137)  (LYS291)   [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Candida parapsilosis [TaxId: 5480]
 d4h8na_ :   (THR138)  (ASN294)   [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Candida parapsilosis [TaxId: 5480]
 d1qrqa_ :   (PRO165)  (LEU340)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Voltage-dependent K+ channel beta subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3ntya_ :   (LEU144)  (GLY298)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3onca_ :   (ASN136)  (SER290)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Aldose reductase (aldehyde reductase) |Human (Homo sapiens) [TaxId: 9606]
 d4jq1a_ :   (LEU144)  (GLY298)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |3-alpha-hydroxysteroid dehydrogenase |Human (Homo sapiens), type III [TaxId: 9606]
 d1vp5b_ :   (HIS119)  (THR261)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |2,5-diketo-D-gluconic acid reductase A |Thermotoga maritima [TaxId: 2336]
 d3wg6c_ :   (ASP137)  (LYS291)   [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Candida parapsilosis [TaxId: 5480]
 d2pdba_ :   (GLU146)  (SER290)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Aldose reductase (aldehyde reductase) |Human (Homo sapiens) [TaxId: 9606]
 d3mb9a_ :   (GLU146)  (SER290)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Aldose reductase (aldehyde reductase) |Human (Homo sapiens) [TaxId: 9606]
 d4dbsb_ :   (LEU144)  (GLY298)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Prostaglandin d2 11-ketoreductase (akr1c3) |Human (Homo sapiens) [TaxId: 9606]
 d4gaca_ :   (VAL149)  (ALA291)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1