Protein Concepts Dictionary

Tableau information

Concept source:  d4eraa_  amino acid (a.a.) range (ASP59)(HIS246)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASP59)   (GLN70) H1
	   (ASP73)   (ALA79) E2
	   (ALA90)  (ALA109) H3
	  (ILE115)  (VAL121) E4
	  (ASP125)  (GLY140) H5
	  (LEU142)  (GLY147) E6
	  (THR159)  (ASP171) H7
	  (PRO173)  (PRO178) E8
	  (LEU192)  (ILE210) H9
	  (GLY213)  (ILE218) H10
	  (SER221)  (LEU237) E11
	  (LEU237)  (HIS246) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
E2      135.4°   E2                                                                           
H3      -58.4°  161.6°   H3                                                                    
E4      122.7°  -20.6° -175.3°   E4                                                             
H5      -69.9°  154.2°  -14.0°  162.1°   H5                                                      
E6       95.8°  -45.9°  132.8°  -51.9°  144.5°   E6                                               
H7      -73.3°  146.7°  -36.0°  139.3°  -26.0° -167.5°   H7                                        
E8       93.3°  -58.3°  115.3°  -69.3°  125.6°  -19.8° -151.2°   E8                                 
H9      -87.3°   88.7° -105.7°   70.2°  -99.7°  112.3°  -74.0°  132.0°   H9                          
H10    -109.2°  108.6°  -69.4°  106.3°  -55.8°  154.1°  -38.2°  154.3°   63.6°   H10                  
E11      59.2°  -85.4°   96.6°  -87.6°  110.4°  -39.6° -127.9°  -34.3° -120.4° -165.9°   E11           
H12     -95.0°   56.2° -141.7°   35.7° -139.8°   71.4° -114.8°   91.2°  -41.1°  -98.9°   90.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4igna_ :    (PRO56)  (MET242)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3ij6c_ :    (ASP41)  (ILE220)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Lactobacillus acidophilus [TaxId: 1579]
 d4ofca_ :    (PRO56)  (MET242)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2wm1a_ :    (ASP55)  (MET242)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2f6ka1 :    (PRO37)  (ILE217)   [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |Putative amidohydrolase LP2961 |Lactobacillus plantarum [TaxId: 1590]
 d4eraa_ :    (ASP59)  (HIS246)   [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
 d3ij6a_ :    (ASP41)  (ILE220)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Lactobacillus acidophilus [TaxId: 1579]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1