Protein Concepts Dictionary

Tableau information

Concept source:  d2jjxa_  amino acid (a.a.) range (ASP67)(ASN237)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEEHHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASP67)   (THR94) H1
	   (GLU97)  (SER103) E2
	  (ILE114)  (GLY125) H3
	  (ILE127)  (GLY132) E4
	  (THR140)  (ASN153) H5
	  (ALA156)  (GLN162) E6
	  (SER177)  (LYS183) E7
	  (ASN185)  (ASN193) H8
	  (ASP198)  (TYR208) H9
	  (PRO211)  (PHE215) E10
	  (VAL222)  (LEU228) H11
	  (GLY233)  (ASN237) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
E2     -173.0°   E2                                                                           
H3       25.3° -161.4°   H3                                                                    
E4     -162.9°  -18.2° -154.1°   E4                                                             
H5      -56.0°  118.9°  -71.2°  134.3°   H5                                                      
E6       97.1°  -87.6°   85.1°  -70.8°  152.9°   E6                                               
E7      -69.8°  104.0°  -89.3°  116.6°  -20.5° -155.9°   E7                                        
H8      139.3°  -45.6°  123.8°  -30.4° -164.5°   42.2° -146.5°   H8                                 
H9      -60.6°  116.2°  -68.3°  134.1°   17.4° -153.0°   34.6° -156.6°   H9                          
E10      76.9° -107.9°   65.4°  -91.1°  132.9°  -20.4° -142.3°   62.4° -133.8°   E10                  
H11     -86.0°   91.6°  -88.9°  109.8°  -38.3°  158.0°  -44.6°  131.0°  -26.0°  150.2°   H11           
E12    -117.7°   57.9° -126.1°   75.3°  -61.9°  145.2°   52.4° -103.0°  -58.8°  164.9°  -37.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2v4ya_ :    (ARG73)  (GLU241)   [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3ek5b_ :    (ARG70)  (GLN237)   [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
 d1z9da1 :    (ARG71)  (SER239)   [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Uridylate kinase PyrH |Streptococcus pyogenes [TaxId: 1314]
 d2bnda1 :    (ASN72)  (GLU241)   [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Uridylate kinase PyrH |Escherichia coli [TaxId: 562]
 d3ek6a_ :    (VAL71)  (GLN237)   [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
 d3ek6c_ :    (ARG70)  (GLN237)   [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
 d2jjxa_ :    (ASP67)  (ASN237)   [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
 d1ybda1 :    (VAL85)  (CYS241)   [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Uridylate kinase PyrH |Neisseria meningitidis [TaxId: 487]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.73