Protein Concepts Dictionary

Tableau information

Concept source:  d2dtuc2  amino acid (a.a.) range (ASP579)(GLU770)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HEEHHEEEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASP579)  (GLY610) H1
	  (LEU618)  (THR622) E2
	  (ASP623)  (SER628) E3
	  (ALA629)  (LYS635) H4
	  (ASN645)  (ASN675) H5
	  (MET681)  (ARG685) E6
	  (GLU686)  (PRO691) E7
	  (GLY699)  (GLY704) E8
	  (ARG707)  (ASN711) E9
	  (GLU722)  (MET728) E10
	  (PRO738)  (LEU753) H11
	  (GLU757)  (GLU770) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
E2      157.3°   E2                                                                           
E3      -20.4°  171.1°   E3                                                                    
H4       19.3° -138.1°  -38.1°   H4                                                             
H5      129.5°  -52.9°  135.8°  128.4°   H5                                                      
E6      -46.5°  134.9°  -36.7°  -51.5°  170.6°   E6                                               
E7      -49.2°  147.8°  -29.3°  -64.5°  140.1°  -30.7°   E7                                        
E8     -138.7°   60.1° -127.0° -153.3°  -38.3°  136.4° -110.7°   E8                                 
E9       44.6° -115.7°   57.5°   28.4° -137.2°   48.4°   74.4° -174.9°   E9                          
E10    -132.4°   65.6° -122.0° -146.7°   37.4° -136.1° -108.3°   -6.6°  173.0°   E10                  
H11      30.6° -136.4°   46.9°  -31.8°  100.0°  -76.9°  -75.5°  122.3°  -58.1°  115.9°   H11           
H12     132.0°   60.0° -115.8°  134.4°  -96.4°   85.9°   87.8°  -68.6°  112.4°  -74.3°  162.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3suna2 :   (LEU594)  (GLU770)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3cfoa2 :   (ASP579)  (GLY756)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d2dtuc2 :   (ASP579)  (GLU770)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4fjna2 :   (ARG581)  (GLY756)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4khna2 :   (LEU594)  (GLY756)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3rmca2 :   (ASP579)  (LYS769)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d1ig9a2 :   (ARG581)  (GLU770)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3suoa2 :   (ARG581)  (LYS769)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3scxa2 :   (LEU594)  (GLU770)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3rmbc2 :   (ASP579)  (GLY756)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4i9la2 :   (ASP579)  (GLU770)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d1clqa2 :   (ASP579)  (LEU774)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d2dy4c2 :   (ASP579)  (GLU770)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8