Protein Concepts Dictionary

Tableau information

Concept source:  d1fmd3_  amino acid (a.a.) range (THR89)(LEU213)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HEEEHEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR89)   (THR99) H1
	   (THR99)  (GLY103) E2
	  (ILE105)  (PHE111) E3
	  (ASP116)  (TYR125) E4
	  (ASN135)  (ALA140) H5
	  (ILE143)  (ASP148) E6
	  (SER153)  (ALA164) E7
	  (ASP166)  (ALA171) E8
	  (TRP183)  (GLN188) E9
	  (ILE189)  (LYS193) E10
	  (ASP197)  (ALA203) E11
	  (PHE209)  (LEU213) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
E2      128.9°   E2                                                                           
E3     -166.3°  -63.6°   E3                                                                    
E4       13.2° -118.5°  165.1°   E4                                                             
H5       51.3°  -80.8° -142.4°   47.1°   H5                                                      
E6      164.6°   62.0°  -17.8°  177.1° -131.2°   E6                                               
E7      -19.7° -119.7°  155.2°    9.9°   55.1° -172.8°   E7                                        
E8     -102.1°  129.0°   65.6°  111.7°  146.1°  -68.4°  108.2°   E8                                 
E9      173.0°   46.4°  -17.2°  159.8° -126.1°  -22.4°  153.7°  -82.7°   E9                          
E10    -146.7°   80.8°   28.3° -159.5°  139.4°   19.2° -159.1°  -51.1°   40.2°   E10                  
E11      28.6°  114.2°  159.8°  -35.0°   34.7°  142.1°  -44.7° -111.7°  153.5°  133.7°   E11           
E12      34.3°  161.5° -134.2°   46.2°   80.7° -132.7°   47.5°  -68.6° -151.3° -113.5°  -47.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1mec3_ :    (THR92)  (MET221)   [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Mengo encephalomyocarditis virus coat proteins |Mengovirus [TaxId: 12107]
 d2wzr3_ :    (THR89)  (MET214)   [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Foot-and-mouth disease virus [TaxId: 12122]
 d1zba3_ :    (THR89)  (LEU214)   [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Foot-and-mouth disease virus [TaxId: 12110]
 d2mev3_ :    (THR92)  (MET221)   [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Mengo encephalomyocarditis virus coat proteins |Mengovirus [TaxId: 12107]
 d1fmd3_ :    (THR89)  (LEU213)   [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |Aphthovirus (Foot-and-mouth disease virus) coat proteins |FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]
 d2ws93_ :    (THR88)  (HIS218)   [view usage] : b.121.4.0 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |automated matches |automated matches |Equine rhinitis a virus [TaxId: 47000]
 d4gh4c_ :    (THR89)  (LEU214)   [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Foot-and-mouth disease virus - type a [TaxId: 12111]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 b.121