Protein Concepts Dictionary

Tableau information

Concept source:  d3sioa_  amino acid (a.a.) range (LYS-6)(MET126)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HEEEEHEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS-6)   (SER17) H1
	   (PRO28)   (LEU37) E2
	   (LEU38)   (ASP44) E3
	   (ASN48)   (VAL53) E4
	   (TYR54)   (TRP60) E5
	   (ASP68)   (GLY73) H6
	   (THR76)   (SER81) E7
	   (SER81)   (TRP86) H8
	   (PRO98)  (SER103) E9
	  (GLN105)  (SER111) E10
	  (HIS114)  (ALA120) E11
	  (ALA120)  (MET126) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
E2     -121.6°   E2                                                                           
E3      -50.8°  -75.6°   E3                                                                    
E4      142.7°   95.7°  155.7°   E4                                                             
E5       76.7°  159.1° -125.0°  -66.8°   E5                                                      
H6      133.4°  -70.1°  100.6°  -55.3°  105.7°   H6                                               
E7      -67.3°  -72.3°   24.6° -131.2°  127.6°   76.5°   E7                                        
H8       40.5° -148.3°  -91.1°  106.7°   41.3°  141.4° -106.7°   H8                                 
E9      155.4°   81.6°  153.6°  -17.1°  -79.1°  -58.6° -133.6°  115.3°   E9                          
E10      97.2°  128.4° -147.3°   54.4°  -31.9° -108.3°  159.3°   56.7°   58.9°   E10                  
E11     -92.8°  -34.8°   42.6° -121.5°  165.8°  -74.5°  -38.2° -131.7°  111.9°  162.1°   E11           
E12      36.2°  -86.1°  -31.1°  173.1°  110.0°  131.4°   55.7°  -69.2°  159.5° -119.5°  -62.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2w8gc_ :     (GLN1)  (MET124)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d3t4mi_ :    (ASP-5)  (MET126)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d2ymea_ :     (GLN1)  (MET124)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d3guab_ :    (ASP-8)  (MET126)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d3sioa_ :    (LYS-6)  (MET126)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d3sh1a_ :    (ASP-5)  (MET126)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]
 d3t4md_ :    (ASP-5)  (MET126)   [view usage] : b.96.1.0 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |automated matches |California sea hare (Aplysia californica) [TaxId: 6500]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.96