Protein Concepts Dictionary

Tableau information

Concept source:  d1wlia_  amino acid (a.a.) range (GLY4)(TYR122)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HEEEEHEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY4)   (LEU10) H1
	   (VAL16)   (GLN21) E2
	   (GLY25)   (ASN30) E3
	   (TYR35)   (ASP40) E4
	   (ASN42)   (PRO47) E5
	   (MET51)   (ASP61) H6
	   (VAL64)   (SER70) E7
	   (PRO79)   (GLY87) E8
	   (GLY87)   (PHE91) E9
	   (GLY95)  (ALA100) H10
	  (ARG108)  (THR114) E11
	  (VAL116)  (TYR122) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
E2     -112.0°   E2                                                                           
E3      -65.1°  160.8°   E3                                                                    
E4     -153.9°   75.3°  -99.4°   E4                                                             
E5       15.7°  -96.5°   79.0°  150.7°   E5                                                      
H6     -159.9°   50.8° -126.9°  -27.6° -144.8°   H6                                               
E7       70.2°  158.6°  -40.4° -112.5°   85.4° -129.8°   E7                                        
E8     -107.7°  -36.5°  124.6°   62.4°  -94.1°  -52.6°  164.8°   E8                                 
E9      -45.2°  -89.8°   74.9°  112.3°  -38.8° -118.0°  104.3°  -67.3°   E9                          
H10     -53.4° -134.0°   61.1°  139.2°  -65.5°  144.6°   29.6° -158.3°  -97.4°   H10                  
E11     157.1°   80.7° -109.1°  -45.5°  162.3°   41.4°  -91.0°   93.8°  157.4°  103.9°   E11           
E12      73.9°  122.8°  -75.6° -124.6°   83.7°  122.7°  -36.1°  158.9° -118.9°   22.3°  -83.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1wlia_ :     (GLY4)  (TYR122)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |FMN-binding protein |Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]
 d3a6ra_ :     (GLY4)  (LEU122)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |FMN-binding protein |Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]
 d2asfa1 :    (ASP12)  (GLY129)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Hypothetical protein Rv2074 |Mycobacterium tuberculosis [TaxId: 1773]
 d3amfa_ :     (THR5)  (LEU122)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |FMN-binding protein |Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]
 d3awha_ :     (THR5)  (LEU122)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |FMN-binding protein |Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]
 d2e83a_ :     (GLY4)  (LEU122)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |FMN-binding protein |Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]
 d3a20a_ :     (GLY4)  (LYS122)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |FMN-binding protein |Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]
 d1wlka_ :     (GLY4)  (GLU122)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |FMN-binding protein |Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.45