Protein Concepts Dictionary

Tableau information

Concept source:  d3roua1  amino acid (a.a.) range (PRO9)(ALA135)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HEEEEEEHEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (PRO9)   (CYS18) H1
	   (HIS19)   (PRO24) E2
	   (LEU29)   (GLY33) E3
	   (THR38)   (ILE42) E4
	   (GLY45)   (ILE51) E5
	   (LYS57)   (GLN66) E6
	   (GLY67)   (GLY71) E7
	   (GLY71)   (GLU77) H8
	   (GLY79)   (ALA88) E9
	   (GLU93)   (SER98) E10
	   (SER98)  (ASN109) H11
	  (ASP111)  (ALA135) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
E2       85.0°   E2                                                                           
E3       71.6°   98.4°   E3                                                                    
E4     -128.9°  -58.9° -142.1°   E4                                                             
E5       71.5°   81.5°  -17.0° -128.7°   E5                                                      
E6     -119.3° -125.2°  134.7°  -68.8°  150.1°   E6                                               
E7       42.3°   93.8°   29.3°  152.5°   32.9° -138.3°   E7                                        
H8       80.6°  146.7°   48.5° -148.5°   65.5°   87.9°   56.0°   H8                                 
E9     -105.0°  -44.9° -142.8°   23.9°  125.8°  -80.4° -134.6° -168.3°   E9                          
E10      71.6°  136.5°   40.0°  159.0°  -56.7°   98.3°  -44.7°   11.3° -175.3°   E10                  
H11     151.2° -123.3° -105.6°   71.3° -114.3°   42.4° -129.8°  -77.2°   94.0°   87.9°   H11           
H12     -90.3°   33.8°  -68.5°   78.9°  -51.9°  145.5°  -75.5° -116.1°   74.5° -108.5° -115.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1g6na2 :     (PRO9)  (ALA135)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d1i6xb2 :     (ASP8)  (LEU137)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d3qopa1 :     (ASP8)  (ALA135)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d1i5zb2 :     (PRO9)  (PHE136)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d3roua1 :     (PRO9)  (ALA135)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d4i02b1 :    (PRO10)  (LEU138)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d4i01a1 :    (PRO10)  (ALA136)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1i6xa2 :    (THR10)  (LEU137)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d1i5za2 :    (LEU15)  (LEU137)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d4i0ab1 :    (PRO10)  (PHE137)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d4i09a1 :    (THR11)  (LEU138)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1hw5a2 :     (ASP8)  (LEU137)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d4i02a1 :    (PRO10)  (LEU138)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d4i0aa1 :    (LEU16)  (VAL127)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1o3qa2 :    (THR10)  (LEU137)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d4i09b1 :     (ASP9)  (LEU138)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Escherichia coli K-12 [TaxId: 83333]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.82