Protein Concepts Dictionary

Tableau information

Concept source:  d2avfb2  amino acid (a.a.) range (ALA223)(GLY324)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: HEEEEEEEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ALA223)  (ALA232) H1
	  (ALA232)  (ALA236) E2
	  (ARG240)  (ASN249) E3
	  (ASP251)  (LEU256) E4
	  (GLY258)  (TYR263) E5
	  (TYR263)  (THR267) E6
	  (ARG271)  (ASP277) E7
	  (GLU279)  (PRO284) E8
	  (THR287)  (GLN297) E9
	  (GLY299)  (ASN305) E10
	  (ILE309)  (GLY315) H11
	  (GLY318)  (GLY324) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                  
E2      -39.0°   E2                                                                           
E3      168.2° -152.5°   E3                                                                    
E4      -16.3°  -47.0°  158.6°   E4                                                             
E5      101.1°   74.0°  -85.1°  116.1°   E5                                                      
E6      159.0°  143.1°  -17.7°  166.6°  -70.1°   E6                                               
E7      -73.1°  -88.9°  105.1°  -56.8° -156.5°  122.5°   E7                                        
E8      141.9°  132.3°  -35.1°  154.8°   58.8°   17.8°  138.0°   E8                                 
E9      -27.3°  -51.1°  150.5°  -11.4°  123.8° -165.8°  -46.1° -164.1°   E9                          
E10     164.0°  128.5°  -24.5°  173.2°  -62.9°  -20.1°  121.1°  -31.4°  163.7°   E10                  
H11     -89.0° -124.3°   79.3°  -89.7°  109.8°   77.0°  -93.0°   71.3°  -94.1°   97.0°   H11           
E12      12.0°  -27.1°  178.7°  -22.5°   93.7°  161.0°  -76.3°  143.5°  -30.8°  154.7° -100.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1n70a2 :   (ALA255)  (GLY356)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Rhodobacter sphaeroides [TaxId: 1063]
 d1rzpa2 :   (ALA223)  (GLY324)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Achromobacter cycloclastes [TaxId: 223]
 d2avff2 :   (ALA223)  (GLY324)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
 d1gs6x2 :   (LYS217)  (GLY318)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d1kcba2 :   (THR228)  (GLY324)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Achromobacter cycloclastes [TaxId: 223]
 d2bp0a2 :   (LYS217)  (GLY318)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
 d2y1aa2 :   (ALA223)  (GLY324)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Achromobacter cycloclastes [TaxId: 223]
 d1zv2a2 :   (ALA255)  (GLY356)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Rhodobacter sphaeroides [TaxId: 1063]
 d4cspa2 :   (LYS217)  (GLY318)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
 d1ndta2 :   (THR222)  (GLY318)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d2avfa2 :   (ALA223)  (GLY324)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
 d2avfd2 :   (THR228)  (GLY324)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
 d1wa2x2 :   (LYS217)  (GLY318)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d2avfb2 :   (ALA223)  (GLY324)   [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.6