Protein Concepts Dictionary

Tableau information

Concept source:  d4ls6b1  amino acid (a.a.) range (VAL100)(GLY249)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EHHHEHEHHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (VAL100)  (GLY107) E1
	  (GLY110)  (LEU122) H2
	  (PHE132)  (ILE138) H3
	  (ASP140)  (LEU150) H4
	  (GLY154)  (VAL160) E5
	  (THR165)  (GLY180) H6
	  (ASP183)  (THR195) E7
	  (THR195)  (LYS206) H8
	  (ASP213)  (ARG219) H9
	  (VAL229)  (GLY233) E10
	  (GLY235)  (GLU241) E11
	  (LEU242)  (GLY249) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
H2      -61.4°   H2                                                                           
H3       86.6° -146.7°   H3                                                                    
H4      152.1°  112.2° -100.4°   H4                                                             
E5       -7.7°  -68.9°   78.9°  154.1°   E5                                                      
H6      159.0°  120.9°  -85.6°  -48.8°  154.5°   H6                                               
E7      -22.4°  -48.1° -104.1°  132.3°  -29.2°  168.9°   E7                                        
H8       54.2°  106.1°  -42.0° -141.7°   47.1°  108.8°  -76.4°   H8                                 
H9      110.0°  114.1°  -66.2°  -97.4°  105.7°  -49.0°  129.9°   64.6°   H9                          
E10    -154.2°  -94.5°  118.5°   26.6° -161.8°   41.3° -133.0°  150.0°  -87.4°   E10                  
E11     147.1° -126.6°   75.5°  -60.0°  141.7°  -13.0°  166.7°   95.7°  -37.4°  -54.3°   E11           
H12    -118.4°  102.0° -101.4°   33.8° -120.5°   82.3° -100.7° -137.5° -129.2°   54.2°   92.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4ewga1 :   (ARG100)  (GLY250)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
 d4ls6a1 :   (VAL100)  (GLY249)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
 d1tqyb1 :    (MET98)  (GLY246)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB |Streptomyces coelicolor [TaxId: 1902]
 d4ewgb1 :   (ARG100)  (GLY250)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
 d2gp6a1 :   (LEU107)  (ALA256)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d4ls6b1 :   (VAL100)  (GLY249)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
 d4ls5a1 :   (VAL100)  (GLY249)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
 d4ls7b1 :   (VAL100)  (GLY249)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
 d2alma1 :   (PHE101)  (LYS248)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoacyl-ACP synthase II |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d4ls8a1 :   (VAL101)  (GLY250)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.95