Protein Concepts Dictionary

Tableau information

Concept source:  d2owda_  amino acid (a.a.) range (GLU2)(ASP171)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEHHEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLU2)    (HIS8) E1
	   (LEU12)   (GLY17) H2
	   (THR28)   (ARG37) H3
	   (PRO46)   (SER50) E4
	   (LEU52)   (GLY63) H5
	   (ARG67)   (PRO70) E6
	   (ASP89)   (PHE99) H7
	  (LEU110)  (LEU124) H8
	  (ALA128)  (THR132) E9
	  (HIS133)  (GLY145) H10
	  (GLY153)  (ASP159) E11
	  (ARG167)  (ASP171) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
H2      -82.1°   H2                                                                           
H3      157.7°  108.4°   H3                                                                    
E4      -38.4°   60.8°  163.4°   E4                                                             
H5      114.8° -117.3°  -42.9°  151.7°   H5                                                      
E6      -47.6°   50.6°  153.0°  -11.3°  155.2°   E6                                               
H7     -149.4° -112.0°    8.3°  171.1°  -34.7°  159.9°   H7                                        
H8      132.9° -135.7°  -29.2°  163.5°  -32.2°  171.7°  -24.0°   H8                                 
E9      -25.8°   60.9°  168.5°  -15.9°  135.9°  -22.4° -166.7°  158.7°   E9                          
H10    -140.8°  -58.9°   52.0°  113.1°  -83.4°  101.9°   58.1°  -81.2° -118.7°   H10                  
E11     161.5°   87.1°  -40.8°  123.1°  -83.5°  114.2°   49.0°  -64.3°  136.5°   33.3°   E11           
E12     -38.9° -100.5°  118.8°  -76.8°   76.0°  -84.9° -110.6°   97.9°  -62.4° -139.2°  159.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2pa0a_ :     (GLU2)  (ASP171)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d2p75a_ :     (GLU2)  (ASP171)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d2p2za_ :     (GLU2)  (ASP171)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus [TaxId: 274]
 d2enua_ :     (GLU2)  (ASP171)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d2p30a_ :     (GLU2)  (ASP159)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus [TaxId: 274]
 d2p9fa_ :     (GLU2)  (ASP171)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus [TaxId: 274]
 d2owda_ :     (GLU2)  (ASP171)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d2p77a_ :     (GLU2)  (ASP171)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d2p6ma_ :     (GLU2)  (ASP171)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus [TaxId: 274]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.60