Protein Concepts Dictionary

Tableau information

Concept source:  d3slha_  amino acid (a.a.) range (LYS301)(GLY426)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEEEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LYS301)  (PRO307) E1
	  (THR313)  (PHE317) H2
	  (PHE317)  (ALA327) H3
	  (GLY329)  (ASP335) E4
	  (ARG346)  (GLY358) H5
	  (ALA360)  (PRO365) E6
	  (ASP366)  (GLY372) E7
	  (GLY378)  (TYR383) E8
	  (ASP385)  (GLY396) H9
	  (GLY401)  (ASN407) E10
	  (CYS408)  (SER414) H11
	  (ASN417)  (GLY426) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
H2     -125.3°   H2                                                                           
H3     -146.8°  -61.9°   H3                                                                    
E4        9.5° -118.9° -153.5°   E4                                                             
H5     -169.5°   44.8°  -31.8° -163.4°   H5                                                      
E6       -5.9° -124.3°  141.0°  -14.1° -166.0°   E6                                               
E7      170.4°   64.2°  -33.2°  173.0°   19.6°  168.9°   E7                                        
E8       10.8°  126.4°  157.3°    8.7°  169.0°   16.7° -165.1°   E8                                 
H9      164.6°  -68.4°  -28.3°  172.7°  -23.8°  161.6°   -7.6° -164.4°   H9                          
E10      24.4°  108.6°  160.7°  -14.9°  150.4°  -28.7° -161.1°  -18.8° -168.3°   E10                  
H11      62.4° -168.5° -117.3°   67.5° -128.0°   64.3° -108.4°   59.2° -105.3°   75.5°   H11           
H12     148.4°  -83.4°  -31.3°  157.0°  -39.6°  146.0°  -23.0°  150.1°  -16.2°  166.8°   91.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3slha_ :   (LYS301)  (GLY426)   [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
 d3slhd_ :   (LYS301)  (GLY426)   [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
 d3rmtc_ :   (GLN304)  (LEU437)   [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
 d1rf4a_ :   (LYS298)  (ILE425)   [view usage] : d.68.2.2 |IF3-like |EPT/RTPC-like |Enolpyruvate transferase, EPT |5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d3slhc_ :   (LYS301)  (GLY426)   [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
 d3slhb_ :   (LYS301)  (GLY426)   [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.68