Protein Concepts Dictionary

Tableau information

Concept source:  d4a80a_  amino acid (a.a.) range (PHE3)(ASN159)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EHHEEEEEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (PHE3)   (VAL12) E1
	   (ALA15)   (GLY26) H2
	   (PHE30)   (PRO35) H3
	   (SER39)   (GLU45) E4
	   (THR52)   (PHE58) E5
	   (LYS65)   (VAL71) E6
	   (ASP72)   (HIS76) E7
	   (PHE79)   (GLU87) E8
	   (GLU96)  (ALA106) E9
	  (GLY110)  (THR122) E10
	  (GLU131)  (ALA153) H11
	  (HIS154)  (ASN159) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
H2      124.8°   H2                                                                           
H3       81.1°  -87.3°   H3                                                                    
E4     -114.8°  -79.4°  163.3°   E4                                                             
E5       79.9°   82.5°   -7.0°  161.2°   E5                                                      
E6      -84.4° -122.1°  150.3°  -43.0°  155.5°   E6                                               
E7      -25.6° -144.8°   98.1°  -98.6°   99.2°  -61.0°   E7                                        
E8      133.3°   22.9°  -70.9°   93.4°  -67.7°  135.5° -158.8°   E8                                 
E9      -30.5° -153.4°   94.3° -102.1°   96.4°  -61.7°    9.2°  162.1°   E9                          
E10     162.6°  -38.2°  -92.6°   70.7°  -91.8°  108.0°  168.9°  -30.3°  166.8°   E10                  
H11     -20.9°  116.1°   99.5°  -95.4°   97.1°  -72.6°  -28.7°  132.9°  -37.5°  151.2°   H11           
H12    -121.2°   86.4° -155.9°   14.8° -158.7°  -39.9° -100.3°   95.7° -101.6°   68.6° -104.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4bk6a_ :     (GLY1)  (ASN159)   [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Major tree pollen allergen |White birch (Betula verrucosa), Bet v 1 [TaxId: 3505]
 d4bk7a_ :     (PHE3)  (ASN159)   [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Major tree pollen allergen |White birch (Betula verrucosa), Bet v 1 [TaxId: 3505]
 d1llta_ :     (GLY1)  (ASN159)   [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Major tree pollen allergen |White birch (Betula verrucosa), Bet v 1 [TaxId: 3505]
 d1fm4a_ :     (GLY1)  (ASN159)   [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Major tree pollen allergen |European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]
 d4a84a_ :     (PHE3)  (ASN159)   [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |automated matches |Betula pendula [TaxId: 3505]
 d4a8ua_ :     (PHE3)  (ASN159)   [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |automated matches |Betula pendula [TaxId: 3505]
 d4a80a_ :     (PHE3)  (ASN159)   [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Major tree pollen allergen |White birch (Betula verrucosa), Bet v 1 [TaxId: 3505]
 d1qmra_ :     (GLY1)  (ASN159)   [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Major tree pollen allergen |White birch (Betula verrucosa), Bet v 1 [TaxId: 3505]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.129