Protein Concepts Dictionary

Tableau information

Concept source:  d1j1fa_  amino acid (a.a.) range (SER3)(CYS184)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EHEHHHHHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER3)    (GLN9) E1
	   (PRO11)   (LYS19) H2
	   (THR30)   (GLN39) E3
	   (GLN62)   (LEU68) H4
	   (GLN78)   (GLY89) H5
	   (ASN97)  (ASN111) H6
	  (ASP113)  (ALA122) H7
	  (SER131)  (LYS142) H8
	  (PRO147)  (THR153) E9
	  (LYS158)  (LEU162) E10
	  (VAL165)  (ALA170) E11
	  (THR180)  (CYS184) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
H2      -66.8°   H2                                                                           
E3      156.0°   89.5°   E3                                                                    
H4       66.6°  -56.7° -104.6°   H4                                                             
H5      156.6°   99.2°  -25.5°   90.1°   H5                                                      
H6      -60.0°   99.3°  131.9°   48.6°  106.7°   H6                                               
H7      -67.5°   97.8°  122.5°   43.4°   97.6°    9.8°   H7                                        
H8      116.0° -147.5°  -81.6°  155.7°  -86.1°  109.9°  113.4°   H8                                 
E9      -46.7°   20.3°  109.8°  -51.9°  117.1°  -84.7°  -85.8°  148.5°   E9                          
E10     112.8° -155.4°  -86.8°  147.4°  -87.9°  101.2°  104.7°    8.7°  151.8°   E10                  
E11     163.1° -123.3°  -35.4° -129.9°  -40.3°  125.3°  120.2°  -47.7°  143.2°  -51.9°   E11           
E12     -20.5°   50.1°  138.7°  -49.4°  137.1°  -60.2°  -64.5°  136.5°   30.1° -133.2°  173.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1v9ha_ :     (SER3)  (ARG181)   [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease MC1 |Bitter gourd (Momordica charantia) [TaxId: 3673]
 d1j1fa_ :     (SER3)  (CYS184)   [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease MC1 |Bitter gourd (Momordica charantia) [TaxId: 3673]
 d1j1ga_ :     (SER3)  (CYS184)   [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease MC1 |Bitter gourd (Momordica charantia) [TaxId: 3673]
 d1bk7a_ :     (SER3)  (CYS184)   [view usage] : d.124.1.1 |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease Rh-like |Ribonuclease MC1 |Bitter gourd (Momordica charantia) [TaxId: 3673]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.124