Protein Concepts Dictionary

Tableau information

Concept source:  d3n4ja_  amino acid (a.a.) range (MET1)(GLY154)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EHEHHEHEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (MET1)    (PHE7) E1
	   (PRO13)   (THR25) H2
	   (GLN28)   (LYS33) E3
	   (ASP41)   (ALA47) H4
	   (TYR51)   (ILE57) H5
	   (ILE57)   (HIS61) E6
	   (ASP62)   (LYS71) H7
	   (ARG79)   (LEU83) E8
	  (ASP100)  (GLY105) E9
	  (ALA113)  (LEU119) H10
	  (LYS124)  (PRO128) E11
	  (LEU138)  (GLY154) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
H2     -170.6°   H2                                                                           
E3      -13.4° -157.5°   E3                                                                    
H4      114.1°  -74.5°  127.4°   H4                                                             
H5      -74.5°   96.5°  -64.1°  137.7°   H5                                                      
E6      -40.4°  130.3°  -29.9°  140.3°  -34.3°   E6                                               
H7     -164.1°   -7.1°  150.7°  -81.5°   91.8°  125.0°   H7                                        
E8      -45.6°  143.6°  -58.9°   69.6° -113.9°  -83.4°  150.3°   E8                                 
E9      -16.3°  173.2°  -29.2°   99.4°  -90.0°  -56.4°  176.2°  -29.9°   E9                          
H10    -139.8°   36.6°  136.4°  -72.6°   76.2°  108.1°  -38.9° -130.8° -144.9°   H10                  
E11     -92.3°   96.7° -105.7°   23.6° -143.4° -126.5°  103.5°  -46.9°  -76.8°  -95.1°   E11           
H12     160.4°  -13.0°  150.6°  -76.4°   86.7°  121.0°  -14.7°  145.3°  169.1°   24.3°   99.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3n4ja_ :     (MET1)  (GLY154)   [view usage] : c.116.1.1 |alpha/beta knot |alpha/beta knot |SpoU-like RNA 2'-O ribose methyltransferase |automated matches |Yersinia pestis [TaxId: 214092]
 d3n4ka_ :     (LEU2)  (GLY154)   [view usage] : c.116.1.1 |alpha/beta knot |alpha/beta knot |SpoU-like RNA 2'-O ribose methyltransferase |automated matches |Yersinia pestis [TaxId: 214092]
 d4kgnf_ :     (PHE2)  (GLY151)   [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 425067]
 d4kgnc_ :     (PHE2)  (GLY151)   [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 425067]
 d4jala_ :     (LEU2)  (GLY149)   [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3n4kb_ :     (MET1)  (GLY154)   [view usage] : c.116.1.1 |alpha/beta knot |alpha/beta knot |SpoU-like RNA 2'-O ribose methyltransferase |automated matches |Yersinia pestis [TaxId: 214092]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.116