Protein Concepts Dictionary

Tableau information

Concept source:  d2arkf_  amino acid (a.a.) range (LYS3)(LYS178)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS3)    (ASP9) E1
	   (GLY13)   (SER28) H2
	   (GLU33)   (HIS38) E3
	   (LYS44)   (ALA50) H4
	   (ASP51)   (SER57) E5
	   (SER65)   (LEU76) H6
	   (TRP80)   (LYS86) H7
	   (ALA88)   (SER94) E8
	  (GLY100)  (GLY116) H9
	  (GLY135)  (ALA139) E10
	  (SER144)  (GLY168) H11
	  (LEU172)  (LYS178) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
H2      171.1°   H2                                                                           
E3      -11.7°  176.6°   E3                                                                    
H4     -141.4°   31.1° -149.4°   H4                                                             
E5      -13.3°  158.0°  -24.9° -131.4°   E5                                                      
H6      131.1°  -57.4°  119.5°  -78.2° -144.3°   H6                                               
H7     -113.9°   57.4° -125.6°   41.8° -100.7°  114.6°   H7                                        
E8      -27.5°  145.2°  -38.2°  125.9°  -15.9°  155.7°   89.1°   E8                                 
H9      129.7°  -58.9°  118.0°  -80.3°  143.0°    2.3° -116.2°  153.7°   H9                          
E10     -33.8°  140.4°  -43.0°  128.0°  -24.6°  152.6°   88.0°  -10.4°  150.3°   E10                  
H11     140.7°  -47.1°  129.6°  -65.5°  153.4°  -12.9°  103.3° -167.6°  -15.1° -165.2°   H11           
H12     -51.6°  119.6°  -62.6°  -91.6°   39.9° -158.2°   65.2°   37.3° -159.9°   44.8° -149.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2arkb_ :    (ASN-1)  (LYS178)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Flavodoxin FldA |Aquifex aeolicus [TaxId: 63363]
 d2arkd_ :     (LYS3)  (LYS178)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Flavodoxin FldA |Aquifex aeolicus [TaxId: 63363]
 d2arka1 :     (LYS3)  (LYS178)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Flavodoxin FldA |Aquifex aeolicus [TaxId: 63363]
 d2arkf_ :     (LYS3)  (LYS178)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Flavodoxin FldA |Aquifex aeolicus [TaxId: 63363]
 d2arkc_ :     (LYS3)  (LYS178)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Flavodoxin FldA |Aquifex aeolicus [TaxId: 63363]
 d2arke_ :     (LYS3)  (LYS178)   [view usage] : c.23.5.8 |Flavodoxin-like |Flavoproteins |WrbA-like |Flavodoxin FldA |Aquifex aeolicus [TaxId: 63363]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.23