Protein Concepts Dictionary

Tableau information

Concept source:  d1lnqa3  amino acid (a.a.) range (ARG116)(SER242)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ARG116)  (GLY122) E1
	  (SER124)  (ARG135) H2
	  (GLU138)  (ALA143) E3
	  (ASP145)  (GLY156) H4
	  (ASN158)  (GLY162) E5
	  (ARG166)  (LYS172) H6
	  (ARG179)  (LEU185) E7
	  (ASP188)  (LYS200) H8
	  (ARG206)  (GLU210) E9
	  (ASN216)  (GLY224) H10
	  (ASP226)  (SER230) E11
	  (SER230)  (SER242) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
H2     -160.3°   H2                                                                           
E3      -19.2° -167.7°   E3                                                                    
H4      141.3°  -26.7°  160.4°   H4                                                             
E5      -47.5°  150.4°  -29.6°  163.2°   E5                                                      
H6      139.2°  -21.3°  153.9°  -22.4°  168.2°   H6                                               
E7       -6.6° -154.0°  -25.5°  135.1°  -54.0°  132.8°   E7                                        
H8      148.0°  -48.7°  128.8°  -70.7°  101.8°  -69.3°  154.1°   H8                                 
E9      -26.6°  135.4°  -45.7°  115.0°  -73.7°  114.2°  -20.2°  173.0°   E9                          
H10     138.6°  -54.4°  120.2°  -79.3°   96.5°  -73.1°  143.7°  -13.6°  159.6°   H10                  
E11     -42.7°  119.2°  -61.6°   99.4°  -90.0°   98.2°  -36.2°  166.9°  -16.2°  160.3°   E11           
H12     -75.8°   93.7°  -93.6°   67.4° -112.8°   78.9°  -70.7° -133.9°  -53.1° -145.6°  -42.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4l76a1 :   (ARG116)  (SER242)   [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
 d1id1b_ :     (HIS7)  (GLY141)   [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |Rck domain from putative potassium channel Kch |Escherichia coli [TaxId: 562]
 d4l76c1 :   (ARG116)  (SER242)   [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
 d4ei2a1 :   (ARG116)  (ILE243)   [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
 d1lssa_ :     (MET1)  (ARG132)   [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |Ktn Mja218 |Methanococcus jannaschii [TaxId: 2190]
 d3rbxa1 :   (ARG116)  (SER242)   [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
 d2aema1 :   (ARG116)  (SER242)   [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |Potassium channel-related protein MthK |Methanothermobacter thermautotrophicus [TaxId: 145262]
 d1id1a_ :     (ASP6)  (GLY141)   [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |Rck domain from putative potassium channel Kch |Escherichia coli [TaxId: 562]
 d1lnqa3 :   (ARG116)  (SER242)   [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |Potassium channel-related protein MthK |Methanothermobacter thermautotrophicus [TaxId: 145262]
 d2g1ua_ :     (TYR9)  (ILE137)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
 d2hmsa_ :     (GLN8)  (LEU142)   [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |Ktn bsu222 |Bacillus subtilis [TaxId: 1423]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2