Protein Concepts Dictionary

Tableau information

Concept source:  d3nuga_  amino acid (a.a.) range (LYS8)(LEU186)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS8)   (GLY14) E1
	   (ILE19)   (GLY31) H2
	   (THR33)   (ILE39) E3
	   (ASN40)   (GLY52) H4
	   (LYS54)   (ALA59) E5
	   (PRO65)   (LEU78) H6
	   (ASP83)   (ASN87) E7
	   (ALA89)   (VAL95) E8
	  (LEU102)  (GLY131) H9
	  (ALA133)  (ILE139) E10
	  (MET151)  (LEU172) H11
	  (ASN176)  (LEU186) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
H2     -168.5°   H2                                                                           
E3      -16.5° -167.2°   E3                                                                    
H4      139.6°  -33.1°  155.9°   H4                                                             
E5      -36.4°  151.0°  -20.1°  175.9°   E5                                                      
H6      153.9°  -14.6°  161.0°  -26.1°  157.4°   H6                                               
E7      -12.3°  165.3°  -25.9°  132.2°  -43.7°  153.2°   E7                                        
E8      -24.8°  155.2°  -37.3°  123.0°  -53.0°  147.5°   12.5°   E8                                 
H9      170.3°  -14.8°  155.3°  -47.5°  136.6°  -28.1° -176.6° -164.7°   H9                          
E10     -20.1°  152.0°  -36.6°  119.8°  -56.1°  138.9°  -14.4°  -17.3°  166.8°   E10                  
H11     159.6°  -31.7°  145.0°  -58.8°  125.0°  -46.3°  156.7° -149.1°  -20.3° -165.6°   H11           
E12     -38.6°  132.2°  -55.0°  101.0°  -75.0°  119.0°  -34.3°  -33.2°  146.9°  -20.0° -157.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4is3c_ :     (VAL8)  (VAL189)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Clostridium scindens [TaxId: 29347]
 d1nfra_ :     (LYS8)  (GLY184)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Putative oxidoreductase Rv2002 |Mycobacterium tuberculosis [TaxId: 1773]
 d1yxma1 :    (GLN19)  (VAL203)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Peroxisomal trans 2-enoyl CoA reductase |Human (Homo sapiens) [TaxId: 9606]
 d3ndra_ :     (LYS8)  (LEU186)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mesorhizobium loti [TaxId: 381]
 d3r1ia_ :    (LYS12)  (TYR195)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
 d4wuva_ :    (LYS16)  (PHE213)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Haemophilus influenzae [TaxId: 656912]
 d3sx2f_ :    (LYS12)  (GLU207)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium avium [TaxId: 262316]
 d1gz6a_ :    (ARG10)  (ALA193)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |(3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3p19d_ :     (LYS3)  (ALA177)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Vibrio vulnificus [TaxId: 672]
 d3nuga_ :     (LYS8)  (LEU186)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mesorhizobium loti [TaxId: 381]
 d4kwha_ :     (LYS7)  (GLY191)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Streptomyces cyanogenus [TaxId: 80860]
 d3icca_ :     (LYS5)  (PHE190)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
 d3a28a_ :     (LYS3)  (ILE186)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brevibacterium saccharolyticum [TaxId: 1718]
 d4npcb_ :    (LYS17)  (THR194)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brucella suis [TaxId: 470137]
 d2wdza_ :    (ALA12)  (TYR191)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 1063]
 d3pgxa_ :    (ARG12)  (SER206)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium avium [TaxId: 1770]
 d4npca_ :    (LYS17)  (THR194)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Brucella suis [TaxId: 470137]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2