Protein Concepts Dictionary

Tableau information

Concept source:  d1yzqa1  amino acid (a.a.) range (LYS15)(LEU174)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EHEEHHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS15)   (GLU21) E1
	   (GLY25)   (ASP36) H2
	   (GLY47)   (LEU57) E3
	   (ARG60)   (GLN72) E4
	   (GLN72)   (ILE79) H5
	   (ILE79)   (ARG84) H6
	   (ALA88)   (ASP94) E7
	   (VAL98)  (GLY116) H8
	  (ILE120)  (GLY125) E9
	  (ILE138)  (ASN149) H10
	  (VAL150)  (GLU154) E11
	  (ASN162)  (LEU174) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
H2      137.0°   H2                                                                           
E3      129.6°   37.9°   E3                                                                    
E4      -28.2° -147.2°  157.8°   E4                                                             
H5     -140.0°   79.2°  -64.3° -130.1°   H5                                                      
H6     -151.8°   37.1°  -23.0° -175.7°   46.1°   H6                                               
E7      -21.2°  116.0°  116.7°  -42.7° -157.5°  139.4°   E7                                        
H8      145.8°  -77.2°  -75.1°  124.4°   20.0°  -53.1°  166.5°   H8                                 
E9      -30.7°  106.5°  110.6°  -50.2° -163.7°  132.4°   -9.6°  174.2°   E9                          
H10     128.9°  -93.9°  -85.0°  111.4°  -21.0°  -65.4°  150.1°  -17.4°  159.6°   H10                  
E11     -65.0°   73.8°   91.5°  -76.9°  152.7°  107.0°  -44.3°  146.5°  -34.9°  163.2°   E11           
H12     130.5°  -90.7°  -76.4°  117.8°  -12.4°  -58.5°  150.7°  -20.4°  159.8°  -10.8°  164.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2fe4a_ :    (LYS15)  (ARG168)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2y8ea_ :    (ARG11)  (LEU173)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d2ew1a1 :     (ASP6)  (ARG174)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Rab30 |Human (Homo sapiens) [TaxId: 9606]
 d1yzqa1 :    (LYS15)  (LEU174)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Rab6 |Human (Homo sapiens) [TaxId: 9606]
 d1g17a_ :    (LYS22)  (ASP185)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Rab-related protein Sec4 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1yzua_ :    (ALA17)  (ILE181)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4cyma_ :    (ARG22)  (SER198)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4cymb_ :    (GLU23)  (HIS196)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4cz2b_ :    (ARG22)  (PHE199)   [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4q01a_ :     (MET1)  (HIS166)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1g16c_ :    (SER19)  (ASP185)   [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Rab-related protein Sec4 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.37