Protein Concepts Dictionary

Tableau information

Concept source:  d3krea_  amino acid (a.a.) range (PRO88)(ASN237)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EHEEHHEEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO88)   (ARG94) E1
	  (ASN100)  (GLN106) H2
	  (PRO116)  (TYR122) E3
	  (SER128)  (SER133) E4
	  (SER133)  (GLN141) H5
	  (THR144)  (GLY170) H6
	  (GLY170)  (ASP175) E7
	  (PHE176)  (LYS182) E8
	  (ASP190)  (GLU196) E9
	  (CYS202)  (ASP206) E10
	  (LYS215)  (ASN221) H11
	  (ASN224)  (ASN237) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
H2      -69.0°   H2                                                                           
E3      158.0°  100.5°   E3                                                                    
E4      -72.9°  -68.5°  122.4°   E4                                                             
H5     -158.5°  125.2°   42.8°  -96.3°   H5                                                      
H6      -45.3° -105.1°  126.0° -111.1°  128.9°   H6                                               
E7     -132.7°   64.1°   44.6°  -84.5°   62.1°  157.2°   E7                                        
E8      146.7°  117.2°  -55.2°   79.3°  -17.0°  136.9°  -60.3°   E8                                 
E9      -75.5°   94.8°   86.5° -147.9°  115.4°  -45.1°  113.5°  132.4°   E9                          
E10      22.5°  -86.3°  144.6°  -92.5° -148.4°  -22.8°  149.3° -149.0°  -58.2°   E10                  
H11     -90.8°  -56.9°   67.6° -125.2°  110.4°  -88.3°   69.0°  120.7°   49.2°  -88.6°   H11           
H12      78.9°  112.6° -123.0°   45.5°  -80.4°   89.0° -113.5°  -68.5° -132.3°   84.4°  167.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3krea_ :    (PRO88)  (ASN237)   [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Ehrlichia chaffeensis [TaxId: 205920]
 d3nuaa_ :    (VAL92)  (ASN235)   [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Clostridium perfringens [TaxId: 195103]
 d3nuab_ :    (VAL92)  (ASN235)   [view usage] : d.143.1.0 |SAICAR synthase-like |SAICAR synthase-like |automated matches |automated matches |Clostridium perfringens [TaxId: 195103]
 d1obga_ :   (VAL119)  (GLY301)   [view usage] : d.143.1.1 |SAICAR synthase-like |SAICAR synthase-like |SAICAR synthase |SAICAR synthase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.143