Protein Concepts Dictionary

Tableau information

Concept source:  d4nmkc_  amino acid (a.a.) range (ALA24)(ILE165)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEHHHHHEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA24)   (SER30) E1
	   (GLU39)   (ARG45) E2
	   (ARG45)   (LEU59) H3
	   (LEU59)   (ILE65) H4
	   (ALA67)   (MET84) H5
	   (MET84)   (GLY97) H6
	   (THR99)  (GLU119) H7
	  (TYR124)  (GLN130) E8
	  (SER135)  (SER144) E9
	  (VAL148)  (TRP154) E10
	  (TRP154)  (SER159) H11
	  (SER159)  (ILE165) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2      132.6°   E2                                                                           
H3      -90.2°  -75.5°   H3                                                                    
H4      -50.8° -101.5°  -39.5°   H4                                                             
H5      -56.0° -150.9°  133.2° -101.5°   H5                                                      
H6       89.5°  -81.7° -148.4° -128.7°  -70.1°   H6                                               
H7     -122.1°   46.7°  -33.9°  -71.7° -160.9°  128.3°   H7                                        
E8      101.9°  -35.4°  -51.1°  -66.7° -153.7°  -98.2°   40.5°   E8                                 
E9      -79.9° -134.5°  145.0°  123.5°   23.9°   65.6° -150.1°  163.8°   E9                          
E10      43.6° -139.2°  132.6°   94.1°  -21.2°  -59.6°  165.8°  132.8°  -40.7°   E10                  
H11     -91.1°   90.6°   21.6°   46.6° -118.2° -170.0°  -44.2°   71.9° -124.3° -126.1°   H11           
H12    -127.4°   42.6°  -39.4°  -77.1°  163.0°  124.2°   -5.5°  -41.1° -147.5°  170.9°  -48.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4jz6a_ :    (GLN17)  (ILE159)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
 d4h73a_ :    (ALA24)  (ILE165)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
 d4nmjg_ :    (ALA24)  (ILE165)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
 d4nmkc_ :    (ALA24)  (ILE165)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
 d4h73e_ :    (ALA24)  (ILE165)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
 d3zqaa_ :    (GLY21)  (GLY170)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.82