Protein Concepts Dictionary

Tableau information

Concept source:  d3ty6c_  amino acid (a.a.) range (LYS40)(LEU180)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEHHHEEEEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS40)   (LEU44) E1
	   (VAL49)   (ALA54) E2
	   (SER56)   (GLU73) H3
	   (ASN77)   (ASP92) H4
	   (ASP92)   (LEU98) H5
	  (MET101)  (LYS107) E6
	  (THR109)  (GLY115) E7
	  (GLY117)  (PRO122) E8
	  (GLY125)  (GLY130) E9
	  (GLY132)  (SER148) H10
	  (THR152)  (ILE167) H11
	  (ILE175)  (LEU180) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2      155.5°   E2                                                                           
H3      -20.8°  152.3°   H3                                                                    
H4      124.4°  -32.7°  132.6°   H4                                                             
H5     -124.4°   77.4° -109.0° -110.1°   H5                                                      
E6      -43.1°  161.2°  -40.4°  164.7°  -84.4°   E6                                               
E7      118.8°  -37.6°  126.1°   -6.5° -114.8°  160.8°   E7                                        
E8      -90.5°  112.6°  -79.5°  145.0°   35.4°  -49.0°  150.2°   E8                                 
E9      135.5°   32.0°  152.0°   25.2°   98.8° -151.6°   31.3°  127.9°   E9                          
H10     -62.9°  137.7°  -50.4° -167.7°  -61.5°   26.9° -166.3°  -29.1°  156.6°   H10                  
H11     154.4°    2.2°  152.9°  -30.9°   79.2°  162.6°  -36.0°  114.2°  -29.8°  139.7°   H11           
E12      13.0° -155.1°   -7.8°  129.9° -115.1°  -40.6°  123.7°  -83.8°  146.1°  -54.9°  155.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4ho7a_ :    (LYS34)  (GLU173)   [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Trypanosoma brucei [TaxId: 999953]
 d3ty6c_ :    (LYS40)  (LEU180)   [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Bacillus anthracis [TaxId: 198094]
 d1m4ya_ :    (GLY18)  (VAL171)   [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |HslV (ClpQ) protease |Thermotoga maritima [TaxId: 2336]
 d3ty6a_ :    (ALA31)  (LEU180)   [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |automated matches |Bacillus anthracis [TaxId: 198094]
 d1yyfc1 :    (ALA31)  (GLU181)   [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |HslV (ClpQ) protease |Bacillus subtilis [TaxId: 1423]
 d4hnza_ :    (LYS34)  (HIS174)   [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Trypanosoma brucei [TaxId: 999953]
 d1e94a_ :    (LYS33)  (TYR173)   [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |HslV (ClpQ) protease |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.153