Protein Concepts Dictionary

Tableau information

Concept source:  d3vfqa2  amino acid (a.a.) range (GLN1015)(ASN1191)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEHHEEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	 (GLN1015) (LYS1020) E1
	 (ASP1029) (SER1034) E2
	 (GLY1044) (ALA1054) H3
	 (PRO1056) (GLN1067) H4
	 (GLY1074) (LYS1078) E5
	 (ARG1087) (VAL1093) E6
	 (SER1101) (SER1123) H7
	 (LYS1125) (ALA1131) E8
	 (GLY1133) (GLY1138) H9
	 (LYS1141) (ASN1159) H10
	 (GLU1166) (HIS1172) E11
	 (ASP1175) (ASN1191) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2      -61.5°   E2                                                                           
H3       89.6° -136.0°   H3                                                                    
H4     -134.1°  -76.0°  111.8°   H4                                                             
E5       88.3°  139.4°    6.5°  117.0°   E5                                                      
E6      -79.7°  -19.7° -151.3°  -61.9°  156.5°   E6                                               
H7      111.2°  158.2°   24.6°  101.7°  -23.5°  162.1°   H7                                        
E8      -45.2°  -25.0°  133.8°  -98.7°  133.4°  -37.1°  156.4°   E8                                 
H9      -61.8°    0.6° -136.6°  -75.8°  140.0°  -19.2°  158.7°  -24.9°   H9                          
H10     155.4°  137.5°  -65.8°   61.6°  -67.2°  122.1°  -44.8°  158.6°  137.4°   H10                  
E11     -15.2°  -46.9°  103.9° -121.7°  103.1°  -64.6°  126.3°  -30.3°  -47.2°  168.8°   E11           
H12    -150.6°  121.9°  -99.8°   67.6°  -97.9°  102.5°  -75.2°  124.1°  121.4°  -43.4° -147.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2fxka1 :   (GLY194)  (LEU366)   [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Human (Homo sapiens) [TaxId: 9606]
 d3iifb_ :   (GLN195)  (MET363)   [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Human (Homo sapiens) [TaxId: 9606]
 d2dx6a_ :     (ARG3)  (LEU159)   [view usage] : c.50.1.0 |Macro domain-like |Macro domain-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d3vfqa2 :  (GLN1015) (ASN1191)   [view usage] : c.50.1.0 |Macro domain-like |Macro domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1zr3a_ :   (GLY194)  (LYS365)   [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Human (Homo sapiens) [TaxId: 9606]
 d1spva_ :     (ARG4)  (GLN173)   [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Hypothetical protein YmbD |Escherichia coli [TaxId: 562]
 d3iida_ :   (GLN195)  (MET363)   [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Human (Homo sapiens) [TaxId: 9606]
 d1zr3c_ :   (GLY194)  (LEU366)   [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Human (Homo sapiens) [TaxId: 9606]
 d1yd9a1 :    (GLY18)  (LYS189)   [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3iifa_ :   (GLY194)  (MET363)   [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |Histone macro-H2a1.1 |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.50