Protein Concepts Dictionary

Tableau information

Concept source:  d1mkaa_  amino acid (a.a.) range (VAL40)(GLN166)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEHHEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (VAL40)   (GLU44) E1
	   (GLY52)   (PRO62) E2
	   (PHE66)   (PHE71) H3
	   (GLY79)   (LEU97) H4
	  (LYS102)  (GLY107) E5
	  (GLY109)  (THR114) E6
	  (THR114)  (PRO119) E7
	  (VAL124)  (PHE130) E8
	  (LYS131)  (ASN135) E9
	  (LEU138)  (VAL149) E10
	  (ILE154)  (SER158) E11
	  (LEU160)  (GLN166) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2     -162.3°   E2                                                                           
H3       90.6°  -75.7°   H3                                                                    
H4      -50.4°  140.2°  140.3°   H4                                                             
E5       87.4°  -88.0°  -36.2°  130.4°   E5                                                      
E6      150.0°  -40.8°  -83.5°  133.1°  -70.7°   E6                                               
E7     -139.4°   48.3° -122.1°   91.9° -133.2°  -64.9°   E7                                        
E8       -3.0°  164.2°   93.6°  -47.3°   90.1°  151.1° -136.6°   E8                                 
E9      -72.0°  105.4°  121.3°  -47.5°  150.7° -135.4°  -70.5°  -69.9°   E9                          
E10     142.5°  -45.8°  -77.2°  136.7°  -62.0°    8.9°   73.7°  143.9° -144.2°   E10                  
E11     -19.2°  146.9°   90.7°  -50.3°   98.7°  168.2° -126.7°  -18.8°   56.3° -159.5°   E11           
E12     -76.1°  101.8°  123.0°  -49.4°  154.1° -131.1°  -66.3°  -74.0°   -4.2°  139.9°  -60.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4b0bb_ :    (VAL40)  (THR166)   [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3az8k_ :   (ILE109)  (LEU228)   [view usage] : d.38.1.6 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |FabZ-like |(3R)-hydroxymyristoyl ACP dehydrase FabZ |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d4b0ib_ :    (VAL40)  (THR166)   [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3az8j_ :   (ILE109)  (ALA227)   [view usage] : d.38.1.6 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |FabZ-like |(3R)-hydroxymyristoyl ACP dehydrase FabZ |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d3az8c_ :   (ILE109)  (LEU228)   [view usage] : d.38.1.6 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |FabZ-like |(3R)-hydroxymyristoyl ACP dehydrase FabZ |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d4b0ia_ :    (VAL40)  (THR166)   [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3az8a_ :   (ILE109)  (ALA227)   [view usage] : d.38.1.6 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |FabZ-like |(3R)-hydroxymyristoyl ACP dehydrase FabZ |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d4b0ba_ :    (VAL40)  (THR166)   [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d1mkaa_ :    (VAL40)  (GLN166)   [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |beta-Hydroxydecanol thiol ester dehydrase |Escherichia coli [TaxId: 562]
 d4fq9i_ :    (VAL40)  (THR166)   [view usage] : d.38.1.2 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |beta-Hydroxydecanol thiol ester dehydrase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.38