Protein Concepts Dictionary

Tableau information

Concept source:  d3f9ma2  amino acid (a.a.) range (GLU221)(GLY356)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEHEHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLU221)  (GLY227) E1
	  (CYS230)  (MET235) E2
	  (VAL241)  (GLU245) H3
	  (GLY249)  (ASN254) E4
	  (TRP257)  (SER263) H5
	  (LEU271)  (SER281) H6
	  (GLN287)  (ILE293) H7
	  (TYR297)  (ASN313) H8
	  (SER321)  (THR326) H9
	  (THR326)  (GLU331) H10
	  (ARG333)  (ASP341) H11
	  (LYS346)  (GLY356) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2      170.9°   E2                                                                           
H3      120.1°  -51.4°   H3                                                                    
E4       -7.0°  173.7°  123.0°   E4                                                             
H5      -73.2°  111.2°  107.6°   66.5°   H5                                                      
H6       84.6°  -86.5°  -36.4°   88.6° -106.8°   H6                                               
H7      -66.7°  116.1° -134.1°  -69.7°  117.0°  115.1°   H7                                        
H8      -43.3° -145.5°  150.4°   37.5°   49.1°  123.9°  -68.5°   H8                                 
H9      143.1°   33.7°   39.5°  140.5°  -85.1°  -73.4°  149.8° -132.9°   H9                          
H10    -126.3°  -56.3°  -94.6°  129.6°  136.8° -112.7°   59.9°  114.9°  -89.9°   H10                  
H11      90.5°  -96.3° -142.8°   89.9°  101.0°  148.9°   36.9°   66.6° -123.3°   48.3°   H11           
H12     -51.9°  121.6°   72.8°  -52.2°  -67.0°   46.1° -114.6°  -80.1°   92.3°  156.3° -142.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3o08a2 :   (MET227)  (ASN369)   [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
 d1bdga2 :   (ALA225)  (HIS361)   [view usage] : c.55.1.3 |Ribonuclease H-like motif |Actin-like ATPase domain |Hexokinase |Hexokinase |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d4dcha2 :   (GLU221)  (GLY356)   [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1hkca4 :   (GLU673)  (LEU795)   [view usage] : c.55.1.3 |Ribonuclease H-like motif |Actin-like ATPase domain |Hexokinase |Mammalian type I hexokinase |Human (Homo sapiens) [TaxId: 9606]
 d1v4sa2 :   (GLU221)  (GLY356)   [view usage] : c.55.1.3 |Ribonuclease H-like motif |Actin-like ATPase domain |Hexokinase |Glucokinase |Human (Homo sapiens) [TaxId: 9606]
 d1bg3a4 :   (GLU673)  (LEU807)   [view usage] : c.55.1.3 |Ribonuclease H-like motif |Actin-like ATPase domain |Hexokinase |Mammalian type I hexokinase |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1hkba4 :   (GLU673)  (GLY808)   [view usage] : c.55.1.3 |Ribonuclease H-like motif |Actin-like ATPase domain |Hexokinase |Mammalian type I hexokinase |Human (Homo sapiens) [TaxId: 9606]
 d3f9ma2 :   (GLU221)  (GLY356)   [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1czan4 :   (GLU673)  (GLY808)   [view usage] : c.55.1.3 |Ribonuclease H-like motif |Actin-like ATPase domain |Hexokinase |Mammalian type I hexokinase |Human (Homo sapiens) [TaxId: 9606]
 d3w0la2 :   (GLU214)  (GLY349)   [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d4isfa2 :   (GLU221)  (GLY356)   [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.55