Protein Concepts Dictionary

Tableau information

Concept source:  d4oana_  amino acid (a.a.) range (ASP149)(ARG251)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEHEHEHHEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASP149)  (GLY155) E1
	  (PHE156)  (SER162) E2
	  (GLY168)  (LYS173) H3
	  (LYS176)  (PRO180) E4
	  (LEU184)  (ASP193) H5
	  (SER195)  (ASN200) E6
	  (ASN200)  (VAL204) H7
	  (VAL204)  (THR210) H8
	  (GLU214)  (PRO219) E9
	  (PRO219)  (LYS227) H10
	  (LYS233)  (LEU237) E11
	  (MSE241)  (ARG251) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2       36.3°   E2                                                                           
H3       89.7°   53.4°   H3                                                                    
E4      156.3°  142.2°  -96.1°   E4                                                             
H5      -33.5°  -58.0° -102.5°  159.7°   H5                                                      
E6      127.8°  111.3°   78.9°  -32.9°  160.3°   E6                                               
H7       24.2°   52.1°  102.2° -132.7°   50.8°  109.5°   H7                                        
H8      -18.9°  -34.8°   83.4° -174.9°  -23.3°  142.3°  -42.9°   H8                                 
E9     -130.3°  156.4° -133.1°  -37.3°  124.3°  -58.1° -108.8° -142.4°   E9                          
H10      68.5°  -45.5°   48.4°   98.6°  -99.8°   66.2°  -65.2°  -77.2°  117.5°   H10                  
E11    -127.2°  154.8° -134.0°  -61.9°   98.7°  -93.8° -122.7°  121.9°  -43.5° -159.7°   E11           
E12     141.8°  108.7°  -59.1°  -36.9° -160.3°  -32.7° -135.3°  142.2°  -74.1°   74.0°  -90.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4pbqa_ :   (LEU140)  (GLN238)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Haemophilus influenzae [TaxId: 656912]
 d4maga_ :   (ASN113)  (GLN212)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Vibrio cholerae [TaxId: 593588]
 d4oanb_ :   (ASP149)  (ASN250)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
 d2ceya_ :   (SER120)  (GLN214)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Sialic acid-binding protein SiaP |Haemophilus influenzae [TaxId: 727]
 d4o94c_ :   (ASN137)  (ASN241)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
 d4n8ga_ :   (GLY143)  (ASN248)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
 d4o94b_ :   (ASN137)  (ASN241)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
 d4n8gd_ :   (GLY143)  (ASN248)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
 d4pf6a_ :   (GLY136)  (ALA243)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Roseobacter denitrificans [TaxId: 375451]
 d4n8gc_ :   (GLY143)  (ASN248)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
 d4ln5a_ :   (GLY137)  (SER241)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Burkholderia ambifaria [TaxId: 339670]
 d4n8gb_ :   (GLY143)  (ALA247)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
 d2vpnb_ :   (GLY112)  (ALA215)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Halomonas elongata [TaxId: 2746]
 d4oana_ :   (ASP149)  (ARG251)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
 d4mnpa_ :   (ALA121)  (SER220)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Fusobacterium nucleatum [TaxId: 190304]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94