Protein Concepts Dictionary

Tableau information

Concept source:  d4h8wl1  amino acid (a.a.) range (ALA9)(VAL106)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEHEEEEEHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ALA9)   (SER14) E1
	   (GLN17)   (THR26) E2
	   (THR26)   (SER29) H3
	   (PHE32)   (PRO40) E4
	   (ALA43)   (ILE48) E5
	   (SER52)   (SER56) E6
	   (PHE62)   (GLY68) E7
	   (ASN69)   (GLY77) E8
	   (GLN79)   (ASP85) H9
	   (ASP85)   (TYR91) E10
	   (PHE95)   (GLY99) E11
	  (GLY100)  (VAL106) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2      163.7°   E2                                                                           
H3      -41.6°  126.4°   H3                                                                    
E4      -71.2°  124.7°  -94.6°   E4                                                             
E5       75.2°  -90.1°  -68.3°  143.4°   E5                                                      
E6      -65.8°  117.8°   51.4°  -57.8° -119.2°   E6                                               
E7      134.2°  -38.0° -128.4°  136.2°  -64.4°  154.4°   E7                                        
E8      -25.6°  165.7°   51.5°  -47.6°  100.6°  -48.5°  156.2°   E8                                 
H9     -172.0°   22.6°  146.4°  104.2° -107.3°  117.8°  -45.0° -151.5°   H9                          
E10     126.8°  -37.1°   92.6°  155.7°  -60.3°  111.3°  -46.1°  144.1°   59.6°   E10                  
E11     -53.1°  138.2°  -94.4°  -49.0°   98.6°  -93.3°  111.6°  -49.8° -119.0°  153.1°   E11           
E12     -17.5°  175.9°  -56.7°  -55.6°   88.8°  -66.1°  138.3°  -17.8° -155.4°  144.1°   38.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2xzal1 :     (PRO8)  (LYS109)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3t0xa_ :     (PRO8)  (LEU106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3mj9l1 :     (PRO8)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Cricetulus migratorius [TaxId: 10032]
 d3g04a1 :     (PRO8)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4d9ll1 :     (LEU4)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4ot1l1 :     (PRO8)  (VAL108)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4dqol1 :     (SER9)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3kdma1 :     (ALA8)  (ILE110)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3muga1 :     (ALA8)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4osul1 :     (PRO8)  (GLY110)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3lrsb1 :     (ALA8)  (VAL105)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4rnrb1 :     (PRO8)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4f58l1 :     (ALA8)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4nkil1 :     (ALA8)  (VAL109)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4m1dm1 :     (SER9)  (LEU106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3qhzm1 :     (PRO8)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2a9mm_ :     (SER9)  (VAL147)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3tnmb1 :    (SER10)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4fqjl1 :     (LEU4)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2a9ml_ :     (SER9)  (VAL147)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3u2sb1 :     (ALA8)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1nl0l1 :     (LEU4)  (VAL106)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain lambda variable domain, VL-lambda |Human (Homo sapiens), cluster 2 [TaxId: 9606]
 d4f57l1 :     (ALA8)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3u4el1 :     (SER9)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4h8wl1 :     (ALA9)  (VAL106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1