Protein Concepts Dictionary

Tableau information

Concept source:  d1m3ka1  amino acid (a.a.) range (SER109)(GLY268)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEEHHHHEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER109)  (SER118) E1
	  (HIS124)  (GLY130) E2
	  (GLY135)  (ASP141) E3
	  (THR142)  (LEU148) H4
	  (MET157)  (TRP168) H5
	  (SER171)  (GLY193) H6
	  (GLY193)  (ILE199) H7
	  (PHE202)  (ARG207) E8
	  (GLY209)  (ASP214) E9
	  (LEU225)  (LEU231) H10
	  (ASP251)  (LEU257) E11
	  (SER260)  (GLY268) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2      -91.0°   E2                                                                           
E3     -131.4°  137.7°   E3                                                                    
H4     -125.8°   99.2°  -59.6°   H4                                                             
H5      -94.0°  122.8°   63.6°   37.1°   H5                                                      
H6     -120.6°  108.6°   53.8°  106.2°  116.9°   H6                                               
H7     -122.1°   37.3°  103.7°   94.2°  130.8°  -74.7°   H7                                        
E8      -56.2°   70.2° -128.4°  169.5° -149.2°  -78.2°  -77.5°   E8                                 
E9      115.5° -109.5°  -57.8°  -13.4°   23.8°  109.5°  107.6°  171.4°   E9                          
H10      64.6°  -32.3° -158.0°  -99.2° -104.1°  137.3°   69.6°   71.9° -103.2°   H10                  
E11     170.7°  -94.4°   43.9°   45.8°   76.7°   64.7°   65.8°  132.9°  -55.5° -117.6°   E11           
H12    -102.3°  128.7°  -51.7° -111.2° -105.7°   24.5°   98.4°   76.8° -108.6°  148.2°   80.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1m1ta1 :   (SER109)  (GLY268)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Biosynthetic thiolase |Zoogloea ramigera [TaxId: 350]
 d4n44a1 :   (ASP108)  (GLY268)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Clostridium acetobutylicum [TaxId: 863638]
 d2vtza1 :   (SER109)  (GLY268)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Biosynthetic thiolase |Zoogloea ramigera [TaxId: 350]
 d1ulqc1 :   (LYS109)  (ALA272)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoadipyl CoA thiolase |Thermus thermophilus [TaxId: 274]
 d4o9ca1 :   (GLU108)  (GLY269)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
 d1m1oa1 :   (SER109)  (GLY268)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Biosynthetic thiolase |Zoogloea ramigera [TaxId: 350]
 d1dlua1 :   (SER109)  (GLY268)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Biosynthetic thiolase |Zoogloea ramigera [TaxId: 350]
 d4o99a1 :   (GLU108)  (GLY269)   [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
 d1ulqa1 :   (LYS109)  (ALA272)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Beta-ketoadipyl CoA thiolase |Thermus thermophilus [TaxId: 274]
 d1m3ka1 :   (SER109)  (GLY268)   [view usage] : c.95.1.1 |Thiolase-like |Thiolase-like |Thiolase-related |Biosynthetic thiolase |Zoogloea ramigera [TaxId: 350]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.95