Protein Concepts Dictionary

Tableau information

Concept source:  d4fh8i_  amino acid (a.a.) range (PRO11)(HIS166)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEEHHEHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO11)   (THR15) E1
	   (VAL24)   (LEU28) E2
	   (TYR35)   (PRO42) E3
	   (PRO50)   (PHE60) H4
	   (PHE60)   (ASN67) H5
	   (ASN67)   (THR75) E6
	   (SER77)   (THR87) H7
	   (ILE99)  (THR105) E8
	  (GLN108)  (GLY114) H9
	  (ARG125)  (ASP131) E10
	  (GLN138)  (ASP143) E11
	  (VAL150)  (HIS166) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2     -173.4°   E2                                                                           
E3       68.3° -116.0°   E3                                                                    
H4      -90.3°   85.7° -158.3°   H4                                                             
H5     -118.4°   55.4° -151.5°  -43.1°   H5                                                      
E6       72.0° -110.1°  -20.3° -155.2°  131.5°   E6                                               
H7      -73.5°  110.7°   91.2°  -78.9° -117.2°  111.1°   H7                                        
E8       91.4°  -87.9°  -52.0°  135.8°   99.5°  -32.4°  143.2°   E8                                 
H9     -166.4°   19.6° -108.5°   91.4°   71.1° -109.9°   93.7°  -96.7°   H9                          
E10    -109.5°   65.1°  166.4°  -26.0°   17.3°  146.3° -101.1°  115.7°   76.7°   E10                  
E11      66.7° -118.6°  -11.6°  152.3° -162.9°  -31.9°   79.8°  -63.4° -107.4° -175.8°   E11           
H12    -125.9°   47.9°  151.6°  -46.2°    7.8°  132.9° -115.7°  100.5°   63.2°  -20.5°  161.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3tjgd_ :    (PRO86)  (LYS240)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3ztlj_ :    (PRO10)  (GLU163)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d4nmud_ :    (LYS10)  (THR143)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d3zl5a_ :    (PRO10)  (LYS164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d2h66j_ :    (PRO10)  (HIS162)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
 d3zvja_ :     (ARG7)  (HIS165)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d4evma_ :    (ALA53)  (GLU186)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d3tkqc_ :    (PRO49)  (LYS203)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3ztld_ :    (PRO10)  (LYS164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d4kw6a_ :    (PRO11)  (HIS166)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Ancylostoma ceylanicum [TaxId: 53326]
 d3ztli_ :    (PRO10)  (GLY166)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d3zl5b_ :    (PRO10)  (LYS164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d4kb3b_ :    (PRO43)  (GLU197)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Leishmania braziliensis [TaxId: 5660]
 d3zl5f_ :    (PRO10)  (GLU163)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d3ztlf_ :    (PRO10)  (GLY166)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d2h1gb_ :    (SER40)  (ILE172)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
 d4fh8f_ :    (PRO11)  (HIS166)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Ancylostoma ceylanicum [TaxId: 53326]
 d3zvjn_ :    (PRO10)  (GLY166)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d4fh8c_ :    (PRO11)  (HIS166)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Ancylostoma ceylanicum [TaxId: 53326]
 d2h1ga_ :    (SER40)  (ILE172)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol-disulfide oxidoreductase ResA |Bacillus subtilis [TaxId: 1423]
 d3tuea_ :    (PRO13)  (LYS168)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Leishmania major [TaxId: 5664]
 d4kb3a_ :    (PRO43)  (GLU197)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Leishmania braziliensis [TaxId: 5660]
 d3tjbb_ :    (PRO86)  (LYS240)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3ztlc_ :    (PRO10)  (LYS164)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d3tkqd_ :    (PRO49)  (HIS204)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2h66a_ :    (PRO10)  (GLY167)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
 d3zl5e_ :    (PRO10)  (GLU163)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d4fh8i_ :    (PRO11)  (HIS166)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Ancylostoma ceylanicum [TaxId: 53326]
 d2h66f_ :    (PRO10)  (TYR166)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
 d4kw6c_ :    (PRO11)  (GLY167)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Ancylostoma ceylanicum [TaxId: 53326]
 d4kw6e_ :    (PRO11)  (HIS166)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Ancylostoma ceylanicum [TaxId: 53326]
 d4fh8e_ :    (PRO11)  (GLY167)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Ancylostoma ceylanicum [TaxId: 53326]
 d2xpda_ :    (ASP23)  (LYS167)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
 d3drna_ :    (LEU10)  (SER153)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
 d3zl5d_ :    (PRO10)  (GLU163)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.47