Protein Concepts Dictionary

Tableau information

Concept source:  d3mrwa_  amino acid (a.a.) range (LEU48)(ALA175)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEEEHHEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LEU48)   (ASN54) E1
	   (ILE60)   (ASP65) E2
	   (MET72)   (LEU77) E3
	   (THR78)   (PHE83) E4
	   (PRO86)   (SER92) H5
	   (SER92)   (ARG97) H6
	  (ARG100)  (THR104) E7
	  (TYR111)  (ALA117) H8
	  (LYS124)  (LEU129) E9
	  (LEU129)  (LEU140) H10
	  (SER144)  (PHE164) H11
	  (LYS165)  (ALA175) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2      155.0°   E2                                                                           
E3      -48.2°  156.8°   E3                                                                    
E4      114.7°  -41.5°  160.5°   E4                                                             
H5      -89.5°  113.6°  -44.3°  155.0°   H5                                                      
H6      -47.3°  151.9°  -19.4°  158.1°  -43.0°   H6                                               
E7      100.9°  -55.6°  146.5°  -14.1° -169.1°  146.6°   E7                                        
H8      -29.1°  149.8°  -46.7°  113.9°  -90.2°  -57.9°  100.4°   H8                                 
E9       91.1° -104.1°   60.7° -136.3°   30.1°   47.8° -145.0°  105.6°   E9                          
H10     -99.4°   98.9°  -67.4°  113.1°  -65.9°  -85.0°  114.6°   73.2°  -95.3°   H10                  
H11     117.6°  -57.3°  118.3°  -76.2°   87.5°  100.4°  -85.1° -146.6°  -60.4° -134.4°   H11           
H12      15.1°  169.9°  -33.1°  129.5°  -75.1°  -34.2°  115.5°   28.6°  -80.8°  -89.3° -120.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3h5ka_ :    (LEU50)  (ASN189)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |Phytolacca dioica [TaxId: 29725]
 d1moma_ :    (LEU48)  (PHE164)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Momorcharin (momordin) |Bitter gourd (Momordica charantia) [TaxId: 3673]
 d3mrwa_ :    (LEU48)  (ALA175)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |Momordica balsamina [TaxId: 3672]
 d1j4ga_ :    (ARG46)  (ARG174)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Trichosanthin |Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId: 3677]
 d1bryy_ :    (THR48)  (VAL175)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Bryodin |Red briony (Bryonia dioica) [TaxId: 3652]
 d1giua_ :    (ARG46)  (VAL175)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Trichosanthin |Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId: 3677]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.165