Protein Concepts Dictionary

Tableau information

Concept source:  d4v3dd_  amino acid (a.a.) range (LEU11)(LYS175)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEEEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LEU11)   (ARG20) E1
	   (TYR23)   (LEU33) E2
	   (THR38)   (GLU42) E3
	   (THR48)   (GLN54) E4
	   (GLU58)   (GLN85) H5
	   (LEU93)   (LEU99) E6
	  (GLY100)  (GLU106) E7
	  (ALA110)  (VAL118) E8
	  (PHE123)  (GLU129) E9
	  (LEU132)  (THR137) E10
	  (SER141)  (LEU151) H11
	  (ASN155)  (LYS175) H12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2      164.0°   E2                                                                           
E3       -9.0° -172.5°   E3                                                                    
E4      156.3°  -10.9°  162.8°   E4                                                             
H5      -43.0°  136.4°  -44.6°  143.7°   H5                                                      
E6      170.5°  -25.4°  161.5°  -31.7°  137.6°   E6                                               
E7     -159.0°   19.3° -163.4°  -29.9°  118.8°  -28.3°   E7                                        
E8      -12.9°  151.5°  -21.8°  145.7°  -41.7°  176.6°  148.4°   E8                                 
E9      148.6°  -47.4°  139.8°  -54.1°  125.0°  -22.4°  -44.4°  160.1°   E9                          
E10     -57.7°  107.4°  -66.5°  104.9°  -55.7°  131.7°  105.1°  -44.9°  148.5°   E10                  
H11     130.6°  -62.4°  122.5°  -62.8°  139.5°  -40.8°  -69.1°  142.5°  -31.6°  164.9°   H11           
H12     133.1°  -35.5°  138.3°  -24.7° -148.2°  -53.0°  -53.8°  125.3°  -73.9°   94.4°   70.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1l8ja_ :    (ARG10)  (LYS175)   [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Endothelial protein C receptor |Human (Homo sapiens) [TaxId: 9606]
 d1lqvb_ :    (ARG10)  (LEU165)   [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Endothelial protein C receptor |Human (Homo sapiens) [TaxId: 9606]
 d4v3dd_ :    (LEU11)  (LYS175)   [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Endothelial protein C receptor |Human (Homo sapiens) [TaxId: 9606]
 d4v3db_ :    (LEU11)  (LYS175)   [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Endothelial protein C receptor |Human (Homo sapiens) [TaxId: 9606]
 d1lqva_ :     (GLY7)  (SER178)   [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Endothelial protein C receptor |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.19