Protein Concepts Dictionary

Tableau information

Concept source:  d4a63a_  amino acid (a.a.) range (HIS126)(CYS258)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEEEEHHHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (HIS126)  (THR130) E1
	  (THR141)  (PRO146) E2
	  (LYS149)  (GLN154) E3
	  (LYS157)  (SER166) E4
	  (PRO171)  (TYR181) E5
	  (ALA184)  (VAL190) H6
	  (CYS194)  (GLY200) H7
	  (ARG201)  (GLN207) H8
	  (LEU214)  (GLY219) E9
	  (LEU222)  (ASP228) E10
	  (SER235)  (PRO243) E11
	  (PHE249)  (CYS258) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2     -137.3°   E2                                                                           
E3       38.7°  174.6°   E3                                                                    
E4      156.6°  -34.2° -151.1°   E4                                                             
E5      -50.4°   98.8°  -75.8°  133.0°   E5                                                      
H6       96.0° -126.5°   57.9°  -95.9°  124.9°   H6                                               
H7       82.6° -133.7°   51.7°  -99.5°  127.5°  -27.0°   H7                                        
H8      135.1°  -84.6°  100.4°  -52.2° -159.9°  -43.7°  -52.6°   H8                                 
E9       96.1° -102.6°   82.3°  -73.0°  145.0°  -59.6°   38.8°   50.9°   E9                          
E10     -98.2°   71.9° -104.0°   96.2°  -51.1° -110.6° -135.9° -112.7°  163.6°   E10                  
E11     106.0°  -75.5°  108.5°  -54.4°  137.1°  -88.4°   69.9°   63.0°   31.1°  147.4°   E11           
E12     -53.8°  117.3°  -57.8°  144.5°  -31.3°   94.8°  105.2° -130.5°  140.1°  -48.4°  159.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3vd0d_ :   (HIS125)  (CYS258)   [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3vd0a_ :   (HIS126)  (CYS258)   [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3vd0i_ :   (HIS126)  (CYS258)   [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4guob_ :   (GLU128)  (CYS258)   [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3vd0b_ :   (HIS125)  (CYS258)   [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4a63a_ :   (HIS126)  (CYS258)   [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3qync_ :   (ASP139)  (CYS269)   [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.2