Protein Concepts Dictionary

Tableau information

Concept source:  d1oala_  amino acid (a.a.) range (GLN1)(VAL149)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEHEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLN1)    (ASP9) E1
	   (GLY17)   (GLN23) E2
	   (GLY27)   (ASP36) E3
	   (GLY40)   (ILE46) E4
	   (ALA53)   (ASP58) E5
	   (LYS60)   (GLY64) E6
	   (HIS88)   (ALA94) H7
	   (ALA94)   (SER98) E8
	  (GLY101)  (ARG111) E9
	  (THR113)  (LYS118) H10
	  (GLY119)  (HIS125) E11
	  (VAL145)  (VAL149) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2      153.0°   E2                                                                           
E3      -33.4°  172.7°   E3                                                                    
E4      123.4°  -53.1°  130.3°   E4                                                             
E5      -53.0°   99.9°  -86.4°   96.8°   E5                                                      
E6     -147.3°  -58.3°  114.7°  -80.4°  154.9°   E6                                               
H7      -73.4°  120.5°  -53.5°  156.4° -106.8°   78.2°   H7                                        
E8      -66.2°  136.4°  -36.4°  140.3° -114.1°   81.1°   25.3°   E8                                 
E9      133.3°  -23.0°  164.2°  -41.7°   82.1°  -79.4°  140.7°  159.3°   E9                          
H10      46.3° -132.6°  -53.0°   81.2°   71.0° -132.2° -106.4°  -85.8°  112.6°   H10                  
E11     -48.7°  124.0°  -55.4°  161.1°  -64.6°  114.9°  -42.3°  -56.9°  126.9°   94.8°   E11           
E12     143.1°  -50.0°  128.5°  -30.0°  126.2°   51.6°  126.7°  117.0°  -53.8°  -96.9°  166.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ib5a_ :     (LEU3)  (GLN151)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Photobacterium leiognathi [TaxId: 553611]
 d1ibfa_ :     (LEU3)  (GLN151)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Photobacterium leiognathi [TaxId: 553611]
 d2aqsb_ :    (ALA32)  (VAL184)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Neisseria meningitidis [TaxId: 487]
 d1yaia_ :     (LEU3)  (VAL149)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Photobacterium leiognathi [TaxId: 553611]
 d1ibba_ :     (GLN1)  (VAL149)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Photobacterium leiognathi [TaxId: 553611]
 d1oala_ :     (GLN1)  (VAL149)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Photobacterium leiognathi [TaxId: 553611]
 d1oaja_ :     (LEU3)  (VAL149)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Photobacterium leiognathi [TaxId: 553611]
 d1ibda_ :     (GLN1)  (VAL149)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Photobacterium leiognathi [TaxId: 553611]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1