Protein Concepts Dictionary

Tableau information

Concept source:  d2p9oc_  amino acid (a.a.) range (PRO27)(ILE137)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO27)   (LYS33) E1
	   (LYS37)   (ARG43) E2
	   (TYR51)   (VAL57) E3
	   (VAL57)   (ALA63) E4
	   (GLY65)   (ASP72) E5
	   (ASP72)   (PRO78) E6
	   (GLY80)   (ILE85) E7
	   (ARG88)   (SER96) H8
	   (SER96)  (ALA106) E9
	  (PRO111)  (PHE117) E10
	  (ALA122)  (PHE128) E11
	  (ILE132)  (ILE137) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2     -162.8°   E2                                                                           
E3       13.5°  161.9°   E3                                                                    
E4      102.6°  -71.5°   92.1°   E4                                                             
E5      -93.8°  -93.0°  103.8° -163.6°   E5                                                      
E6      162.6°  -34.5° -156.7°  -87.2°   76.7°   E6                                               
E7      -43.9°  119.5°  -45.8°  -74.2°  119.7°  153.4°   E7                                        
H8       61.3°  108.9°   53.1°  -42.2°  153.9° -129.4°   36.8°   H8                                 
E9      109.4°  -86.5°  110.0°  125.5°  -45.5°  -53.6°  152.9°  146.2°   E9                          
E10     -93.0°   75.0°  -86.9°  -24.4°  157.3°  101.3°  -55.0°  -34.3°  148.7°   E10                  
E11     -87.9°   99.3°  -97.7°  169.1°    6.3°   81.9°  116.3°  148.7°  -46.1°  160.6°   E11           
E12     141.9°  -54.7°  139.9°  102.6°  -62.7°   20.9°  174.2° -142.1°  -32.7°  120.5°  -66.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1q5ha_ :     (MET1)  (CYS111)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Human (Homo sapiens) [TaxId: 9606]
 d3so2a_ :     (ARG8)  (LEU115)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |automated matches |Chlorella variabilis [TaxId: 554065]
 d1q5uz_ :     (LEU3)  (CYS111)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Human (Homo sapiens) [TaxId: 9606]
 d3hhqw_ :     (LYS7)  (LEU117)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3araa_ :    (MET24)  (CYS134)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2p9ob_ :    (PRO27)  (ILE137)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d3ca9a_ :     (SER3)  (LEU112)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Paramecium bursaria chlorella virus il3a [TaxId: 46019]
 d1duta_ :     (MET1)  (ILE103)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Feline immunodeficiency virus [TaxId: 11673]
 d1q5ux_ :     (MET1)  (CYS111)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Human (Homo sapiens) [TaxId: 9606]
 d3ehwb_ :    (LEU26)  (CYS134)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3hhqc_ :     (LYS7)  (LEU117)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1f7oa_ :     (MET1)  (LEU104)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Feline immunodeficiency virus [TaxId: 11673]
 d3ca9b_ :     (LEU5)  (GLY119)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Paramecium bursaria chlorella virus il3a [TaxId: 46019]
 d1q5hc_ :     (LEU3)  (CYS111)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Human (Homo sapiens) [TaxId: 9606]
 d1f7da_ :     (MET1)  (ILE103)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Feline immunodeficiency virus [TaxId: 11673]
 d3f4fa_ :     (LYS7)  (LEU117)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2p9oc_ :    (PRO27)  (ILE137)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d1duca_ :     (LEU2)  (ASN110)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Equine infectious anemia virus [TaxId: 11665]
 d1q5hb_ :     (LEU3)  (CYS111)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Human (Homo sapiens) [TaxId: 9606]
 d1q5uy_ :     (LEU3)  (CYS111)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Human (Homo sapiens) [TaxId: 9606]
 d1f7oc_ :   (MET401)  (VAL510)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Feline immunodeficiency virus [TaxId: 11673]
 d3c2ta_ :     (LEU5)  (LEU112)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Paramecium bursaria chlorella virus il3a [TaxId: 46019]
 d3hhqm_ :     (LYS7)  (LEU117)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2p9oa_ :    (PRO27)  (ILE137)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d3hhqg_ :     (LYS7)  (LEU117)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3c3id_ :     (SER3)  (GLY119)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Paramecium bursaria chlorella virus il3a [TaxId: 46019]
 d2hqub_ :    (MET24)  (CYS134)   [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1duna_ :     (LEU2)  (ASN110)   [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) |Equine infectious anemia virus [TaxId: 11665]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.85