Protein Concepts Dictionary

Tableau information

Concept source:  d1pzub2  amino acid (a.a.) range (SER407)(ALA563)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER407)  (GLU413) E1
	  (PRO418)  (TYR424) E2
	  (HIS440)  (HIS446) E3
	  (LEU454)  (ILE460) E4
	  (GLN475)  (GLY481) E5
	  (SER488)  (GLY494) E6
	  (THR496)  (PRO502) E7
	  (MET509)  (ASP514) E8
	  (GLY517)  (ARG522) E9
	  (ARG522)  (LEU528) H10
	  (LYS538)  (SER553) E11
	  (VAL558)  (ALA563) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2       83.0°   E2                                                                           
E3      164.5° -109.4°   E3                                                                    
E4      -54.3°  -77.1°  136.0°   E4                                                             
E5       66.5°   89.5° -103.5°  120.3°   E5                                                      
E6     -113.3°  -70.5°   80.3°  -60.4° -159.6°   E6                                               
E7       97.7°  118.8°  -68.5°  147.8°   40.2°  148.8°   E7                                        
E8      -29.1°   61.7°  166.3°  -35.2°   87.3°  -86.7°  124.4°   E8                                 
E9      -85.4°  -57.8°  108.8°  -36.7°  139.8°  -28.7°  175.2°  -58.0°   E9                          
H10    -151.5°   76.2°  -43.9° -101.4°  131.7°  -41.0° -109.4°  122.4°   67.0°   H10                  
E11     140.3°   97.0°  -32.1°  164.2°  -73.8°  103.8°  -47.7°  152.1°  128.0°   62.8°   E11           
E12     -25.9°  -94.1°  152.8°  -35.6°   89.8°  -95.5°  112.4°  -32.5°  -71.9° -136.3°  160.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2o93l2 :   (SER407)  (ALA563)   [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |T-cell transcription factor NFAT1 (NFATC), DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
 d1pzub2 :   (SER407)  (ALA563)   [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |T-cell transcription factor NFAT1 (NFATC), DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
 d1s9kc2 :   (TYR408)  (SER564)   [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |T-cell transcription factor NFAT1 (NFATC), DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
 d2as5m2 :   (SER407)  (ALA563)   [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |T-cell transcription factor NFAT1 (NFATC), DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
 d1owrm2 :   (GLU409)  (SER570)   [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |T-cell transcription factor NFAT1 (NFATC), DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.2