Protein Concepts Dictionary

Tableau information

Concept source:  d2xx0b1  amino acid (a.a.) range (THR9)(PRO159)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (THR9)   (ALA15) E1
	   (PRO21)   (ALA25) E2
	   (VAL33)   (ASP47) E3
	   (LYS49)   (GLN54) E4
	   (PRO65)   (HIS70) E5
	   (GLY72)   (PRO82) E6
	   (PRO88)   (HIS94) E7
	  (GLY111)  (LYS119) E8
	  (GLY124)  (CYS130) E9
	  (VAL136)  (SER142) H10
	  (MET144)  (PRO152) E11
	  (GLY155)  (PRO159) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2     -122.7°   E2                                                                           
E3       -9.7° -127.3°   E3                                                                    
E4     -146.0°   73.8° -136.4°   E4                                                             
E5      143.4°   24.9° -150.4°   63.3°   E5                                                      
E6      -56.3° -161.7°  -48.8°  -98.2°  160.2°   E6                                               
E7      105.4°  -25.5°  112.9°   98.0°  -38.0°  161.7°   E7                                        
E8      117.0°   14.7°  123.9°   85.5°  -26.6°  171.4°  -12.5°   E8                                 
E9      -73.3°  142.8°  -64.3°   77.5°  140.7°  -21.9°  164.0°  157.5°   E9                          
H10      69.7° -105.3°   77.6° -139.2°  -98.3°   91.6°  -81.7°  -90.6°  111.9°   H10                  
E11     133.3°   33.3°  142.4°  -77.9°  -17.3°  162.5°  -32.7°  -25.9°  153.3°  -81.1°   E11           
E12     -69.9°  -55.0°  -72.7°  109.3°   79.7° -115.2°   50.7°   56.3° -115.9° -101.8°   82.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1as6a1 :    (GLN15)  (GLY165)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes faecalis, strain s-6 [TaxId: 511]
 d1aq8a1 :    (GLN15)  (GLY165)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes faecalis, strain s-6 [TaxId: 511]
 d2vm3a1 :     (PRO7)  (PRO159)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d2xx0a1 :     (THR9)  (PRO159)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
 d1oe2a1 :     (THR9)  (PRO159)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d1oe1a1 :     (THR9)  (PRO159)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]
 d2xx0b1 :     (THR9)  (PRO159)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
 d2bo0a1 :     (THR9)  (PRO159)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
 d1wa0x1 :     (THR9)  (PRO159)   [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Nitrite reductase, NIR |Alcaligenes xylosoxidans [TaxId: 85698]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.6