Protein Concepts Dictionary

Tableau information

Concept source:  d3d5ya_  amino acid (a.a.) range (ALA85)(ARG235)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA85)   (PHE90) E1
	   (ILE94)  (SER100) E2
	  (THR108)  (GLN117) E3
	  (TYR126)  (GLY132) E4
	  (VAL134)  (ALA139) E5
	  (ASP147)  (PHE152) E6
	  (GLN157)  (GLY163) E7
	  (GLY168)  (GLN173) E8
	  (GLU186)  (ALA191) E9
	  (ALA202)  (CYS207) E10
	  (TYR211)  (SER217) E11
	  (LYS230)  (ARG235) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2      168.5°   E2                                                                           
E3      -31.0°  160.5°   E3                                                                    
E4      117.9°  -51.4°  146.5°   E4                                                             
E5      162.4°   -6.1° -166.6°  -45.8°   E5                                                      
E6       19.9°  149.8°  -48.7°  104.8°  144.0°   E6                                               
E7      169.4°  -21.8°  138.7°  -72.7°  -27.9°  164.6°   E7                                        
E8      -21.9°  152.9°  -42.1°  104.4°  149.0°  -33.5°  161.7°   E8                                 
E9      120.4°  -64.1°  105.7° -104.5°  -66.7°  114.4°  -53.4°  142.2°   E9                          
E10      28.1°  144.2°  -51.5°  107.6°  139.3°   12.2°  153.1°  -45.2°  102.3°   E10                  
E11     149.4°  -41.2°  120.4°  -84.6°  -47.0°  169.0°  -24.3°  139.2°  -67.6°  166.1°   E11           
E12     -42.3°  126.2°  -73.3°   78.4°  120.1°  -26.4°  147.3°  -42.8°  122.5°  -31.8°  162.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3cu9a_ :    (ALA85)  (ARG235)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d1wl7a1 :    (ALA85)  (SER236)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |Arabinanase-TS |Bacillus thermodenitrificans [TaxId: 33940]
 d3d60a_ :    (ALA85)  (LYS237)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d1uv4a1 :    (ALA75)  (ARG219)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |Endo-1,5-arabinanase |Bacillus subtilis [TaxId: 1423]
 d1gyhb_ :    (ALA95)  (CYS242)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
 d1gyha_ :    (ALA95)  (CYS242)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]
 d3d61a_ :    (ALA85)  (LYS237)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d3d5ya_ :    (ALA85)  (ARG235)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d1gyeb_ :    (ALA95)  (ARG255)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |alpha-L-arabinanase |Cellvibrio cellulosa [TaxId: 155077]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.67