Protein Concepts Dictionary

Tableau information

Concept source:  d1onkb2  amino acid (a.a.) range (VAL143)(PHE263)

nSSEs in this Concept: 12

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (VAL143)  (PHE148) E1
	  (CYS152)  (GLY157) E2
	  (GLY158)  (VAL162) E3
	  (LYS173)  (GLY178) E4
	  (GLY180)  (PRO184) E5
	  (LEU192)  (ARG196) E6
	  (SER200)  (ILE205) E7
	  (ARG216)  (ASN221) E8
	  (GLY223)  (ASN227) E9
	  (GLY231)  (VAL236) E10
	  (ARG244)  (ILE248) E11
	  (MET258)  (PHE263) E12

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                  
E2      113.0°   E2                                                                           
E3      -57.5°  164.7°   E3                                                                    
E4      109.0°   87.9° -106.3°   E4                                                             
E5      -88.7°  -74.6°   92.5°  159.1°   E5                                                      
E6       56.2°   75.7° -104.2°  -67.0° -117.8°   E6                                               
E7     -154.9°  -67.4°  115.5°   96.1°  -66.9°  140.0°   E7                                        
E8       68.7° -172.2°   12.2°  -98.7°   98.1°  110.6° -107.7°   E8                                 
E9     -103.6°   28.0° -157.1°   65.2° -100.5°  -52.9°   87.1°  159.8°   E9                          
E10     -75.0°   93.7°  -72.7° -174.7°   20.2°  118.3°  -79.9°  -79.3°  117.7°   E10                  
E11      99.5°  -92.6°  100.7°   -9.5° -166.7°  -60.3°  105.5°   94.6°  -67.6°  173.0°   E11           
E12     155.5°  -80.1°  104.7°  -91.6°   74.5° -147.9°   13.8°  -95.6°   97.0°   83.7° -100.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1onkb2 :   (VAL143)  (PHE263)   [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |European mistletoe (Viscum album) [TaxId: 3972]
 d4eb2b2 :   (VAL143)  (PRO263)   [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |automated matches |European mistletoe (Viscum album) [TaxId: 3972]
 d3c9za1 :     (THR1)  (THR126)   [view usage] : b.42.2.0 |beta-Trefoil |Ricin B-like lectins |automated matches |automated matches |Sambucus nigra [TaxId: 4202]
 d1pumb2 :   (VAL143)  (PRO263)   [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |European mistletoe (Viscum album) [TaxId: 3972]
 d1oqlb2 :   (THR138)  (PRO263)   [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |European mistletoe (Viscum album) [TaxId: 3972]
 d1puub4 :   (THR143)  (PRO263)   [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |European mistletoe (Viscum album) [TaxId: 3972]
 d4jkxb2 :   (VAL143)  (PRO263)   [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |automated matches |European mistletoe (Viscum album) [TaxId: 3972]
 d4lo0a1 :    (ILE15)  (ASP144)   [view usage] : b.42.2.0 |beta-Trefoil |Ricin B-like lectins |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
 d1m2tb2 :   (THR390)  (PRO510)   [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |European mistletoe (Viscum album) [TaxId: 3972]
 d4ouja1 :    (ILE15)  (ASP146)   [view usage] : b.42.2.0 |beta-Trefoil |Ricin B-like lectins |automated matches |automated matches |Clostridium botulinum [TaxId: 498213]
 d3o5wb2 :   (VAL390)  (PRO510)   [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |automated matches |European mistletoe (Viscum album) [TaxId: 3972]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.42