Protein Concepts Dictionary

Tableau information

Concept source:  d1pbva_  amino acid (a.a.) range (GLU54)(ASN240)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLU54)   (ASP75) H1
	   (PRO76)   (GLU87) H2
	   (THR92)  (GLY103) H3
	  (LYS108)  (GLY116) H4
	  (GLU120)  (LEU132) H5
	  (ASN139)  (SER150) H6
	  (ALA157)  (MET163) H7
	  (MET164)  (ASN175) H8
	  (THR182)  (ASN201) H9
	  (LEU210)  (ARG218) H10
	  (GLU228)  (ASN240) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                           
H2     -160.5°   H2                                                                    
H3      -79.6°  119.8°   H3                                                             
H4       74.6°  -85.9° -153.3°   H4                                                      
H5     -104.5°   86.2°  -57.8° -122.7°   H5                                               
H6     -108.5°   74.2°   94.3°  100.2°  131.3°   H6                                        
H7     -124.6°   52.8° -103.0°   86.4°  -46.0°  126.0°   H7                                 
H8     -114.4°   64.9°  -94.9°   89.7°  -37.1°  137.0°  -12.4°   H8                          
H9      -78.1°  120.8°   20.0° -149.6°   76.9°  -76.1°  120.5°  113.8°   H9                   
H10      85.0°  -75.7°  164.4°   13.6° -129.4°   88.6°  -87.5°  -93.4°  152.0°   H10           
H11    -103.3°   91.6°   52.3° -141.2°   95.7°  -42.6°  122.0°  124.0°  -36.6°  130.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3ltla_ :   (GLN697)  (LYS881)   [view usage] : a.118.3.0 |alpha-alpha superhelix |Sec7 domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1pbva_ :    (GLU54)  (ASN240)   [view usage] : a.118.3.1 |alpha-alpha superhelix |Sec7 domain |Sec7 domain |Exchange factor ARNO |Human (Homo sapiens) [TaxId: 9606]
 d4jmia_ :    (MET55)  (GLU241)   [view usage] : a.118.3.0 |alpha-alpha superhelix |Sec7 domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4jxha_ :    (MET55)  (ASN240)   [view usage] : a.118.3.0 |alpha-alpha superhelix |Sec7 domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4a4pa_ :    (LYS68)  (ASN245)   [view usage] : a.118.3.1 |alpha-alpha superhelix |Sec7 domain |Sec7 domain |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.118