Protein Concepts Dictionary

Tableau information

Concept source:  d2wzza_  amino acid (a.a.) range (SER254)(GLU388)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: HHEEEHEEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER254)  (HIS267) H1
	  (ARG273)  (ARG284) H2
	  (TYR286)  (GLY290) E3
	  (ASP291)  (LEU296) E4
	  (GLY297)  (ASP302) E5
	  (SER306)  (LEU320) H6
	  (HIS323)  (PRO329) E7
	  (GLN337)  (ASN347) E8
	  (GLY350)  (VAL356) E9
	  (ASP360)  (ASN368) E10
	  (ASN373)  (GLU388) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                           
H2      -87.5°   H2                                                                    
E3     -110.8°  -36.3°   E3                                                             
E4       97.4°  144.7°  151.0°   E4                                                      
E5      -63.4°  -60.8°  -55.6°  150.7°   E5                                               
H6      106.7°   88.6°  107.0°  -56.5°  147.1°   H6                                        
E7       36.4°  122.0°  132.2°  -75.3°   76.7° -115.0°   E7                                 
E8      148.9°   89.0°   83.1°  -69.0°  138.5°  -42.3° -144.3°   E8                          
E9      -29.1°  -99.3° -106.2°  101.7°  -50.6°  133.0°   26.4°  170.6°   E9                   
E10     152.1°   78.2°   70.3°  -81.7°  125.9°  -49.9° -157.0°  -12.8°  176.5°   E10           
H11     -61.2° -109.1°  -95.7°  103.8°  -48.3°  157.1°   43.3°  147.7°  -32.1°  146.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4ooya_ :   (HIS267)  (LEU387)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d4u0xa_ :   (LEU228)  (ILE357)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
 d2wzza_ :   (SER254)  (GLU388)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d1pi4a_ :   (ASN237)  (GLN361)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
 d4hefa_ :   (HIS267)  (GLU388)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d3s1ya_ :   (HIS267)  (GLN389)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d2zj9a_ :   (THR226)  (GLN361)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
 d1l0ea_ :   (ASN237)  (GLN361)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
 d2wzxa_ :   (HIS267)  (GLN389)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d1iela_ :   (THR226)  (GLN361)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
 d1kvla_ :   (ASN237)  (GLN361)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
 d3ixgb_ :   (GLU228)  (GLN361)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |AMPC beta-Lactamase, class C |Escherichia coli, cephalosporinase [TaxId: 562]
 d4gzba_ :   (SER228)  (LYS366)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.3