Protein Concepts Dictionary

Tableau information

Concept source:  d3sfgc_  amino acid (a.a.) range (PHE230)(THR352)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: HEHHHEEHHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PHE230)  (ALA236) H1
	  (ARG239)  (ASP245) E2
	  (ARG248)  (GLN253) H3
	  (GLN254)  (SER269) H4
	  (GLU271)  (LEU282) H5
	  (SER286)  (GLY291) E6
	  (TYR293)  (GLU299) E7
	  (CYS307)  (VAL327) H8
	  (ASP331)  (SER339) H9
	  (SER339)  (TYR344) E10
	  (GLU348)  (THR352) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                           
E2      119.2°   E2                                                                    
H3       71.6°   83.6°   H3                                                             
H4      115.0° -117.3°  -85.7°   H4                                                      
H5      -83.0°   51.5° -105.8°  161.3°   H5                                               
E6     -131.6°  -43.3° -126.7°  111.1°   50.2°   E6                                        
E7       35.1°  152.9°   78.9°  -81.9° -114.3°  150.7°   E7                                 
H8       -7.1°  123.9°   78.0°  113.6°  -83.6° -130.1°   31.9°   H8                          
H9      113.0° -103.0° -167.6°  -81.9°   86.4°   59.8°   98.3°  106.1°   H9                   
E10    -146.4°  -27.9° -100.3°  -96.3°   67.6°   30.8° -178.1°  149.7°  -82.1°   E10           
E11      36.9°  155.3°   81.3°   80.9° -114.9° -149.0°   -2.7°  -33.4°   95.7°  176.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2wk4a_ :   (VAL224)  (PRO355)   [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Sapporo virus [TaxId: 95342]
 d3sfgc_ :   (PHE230)  (THR352)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
 d2wk4b_ :   (VAL224)  (PRO355)   [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Sapporo virus [TaxId: 95342]
 d3sfub_ :   (PHE230)  (THR352)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
 d4nrta_ :   (ASN220)  (ASP350)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Norwalk-like virus [TaxId: 95340]
 d2uuta_ :   (VAL224)  (PRO355)   [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Sapporo virus [TaxId: 95342]
 d4nz0a_ :   (ASP213)  (THR339)   [view usage] : e.8.1.0 |DNA/RNA polymerases |DNA/RNA polymerases |automated matches |automated matches |Mengo virus [TaxId: 12107]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8