Protein Concepts Dictionary

Tableau information

Concept source:  d4iyja_  amino acid (a.a.) range (ALA64)(MSE189)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: HEHHEHHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA64)   (GLY71) H1
	   (GLY71)   (ILE77) E2
	   (SER82)   (ARG88) H3
	   (PHE89)   (ALA97) H4
	   (ALA99)  (ALA105) E5
	  (GLY106)  (GLU112) H6
	  (ASN118)  (LYS137) H7
	  (LYS139)  (SER144) E8
	  (ASP159)  (ASN178) H9
	  (ILE180)  (ASP184) E10
	  (ASP184)  (MSE189) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                           
E2     -135.4°   E2                                                                    
H3      -32.2°  125.7°   H3                                                             
H4      -34.2°  168.1°  -42.8°   H4                                                      
E5      155.8°  -30.6°  155.8°  161.2°   E5                                               
H6     -140.3°  -10.7°  135.8° -173.8°  -21.3°   H6                                        
H7      -27.3°  147.6°   21.9°  -21.0°  175.9°  157.5°   H7                                 
E8      159.7°  -50.0°  168.1°  141.9°  -19.9°  -41.2°  160.4°   E8                          
H9        6.6°  137.5°  -38.5°  -33.3°  152.8°  140.7°  -30.8° -153.3°   H9                   
E10     152.3°  -72.3°  141.3°  118.5°  -47.4°  -66.5°  131.2°  -30.8° -148.8°   E10           
H11     143.8°  -80.3°  139.5°  110.9°  -53.6°  -73.8°  125.6°  -35.1° -139.8°   -9.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3w7va_ :    (ALA47)  (LYS181)   [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d4iyjb_ :    (ASP63)  (GLY205)   [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Bacteroides uniformis [TaxId: 411479]
 d3p94d_ :    (THR65)  (MSE188)   [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Parabacteroides distasonis [TaxId: 435591]
 d4jkoa_ :    (ALA47)  (LYS181)   [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d3p94a_ :    (THR65)  (MSE188)   [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Parabacteroides distasonis [TaxId: 435591]
 d4iyja_ :    (ALA64)  (MSE189)   [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Bacteroides uniformis [TaxId: 411479]
 d1vjga_ :    (TRP30)  (GLU166)   [view usage] : c.23.10.6 |Flavodoxin-like |SGNH hydrolase |Hypothetical protein alr1529 |Hypothetical protein alr1529 |Nostoc sp. PCC 7120 [TaxId: 103690]
 d1z8hc_ :    (TRP30)  (GLU166)   [view usage] : c.23.10.6 |Flavodoxin-like |SGNH hydrolase |Hypothetical protein alr1529 |Hypothetical protein alr1529 |Nostoc sp. PCC 7120 [TaxId: 103690]
 d4jj4a_ :    (ALA47)  (LYS181)   [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d3p94c_ :    (THR65)  (MSE188)   [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Parabacteroides distasonis [TaxId: 435591]
 d4jj6a_ :    (ALA47)  (LYS181)   [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.23