Protein Concepts Dictionary

Tableau information

Concept source:  d3dbrb_  amino acid (a.a.) range (SER41)(LEU162)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: HEHEHHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER41)   (ASP47) H1
	   (CYS49)   (GLY55) E2
	   (GLY58)   (SER70) H3
	   (GLN74)   (ASP79) E4
	   (ASP84)   (ARG90) H5
	  (PRO102)  (ARG114) H6
	  (ASN119)  (ASN125) E7
	  (LYS126)  (ASN131) H8
	  (ASN131)  (GLN137) H9
	  (HIS139)  (CYS143) E10
	  (ILE148)  (LEU162) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                           
E2      -46.7°   E2                                                                    
H3     -141.6° -163.3°   H3                                                             
E4       38.1°  -13.7° -176.4°   E4                                                      
H5      173.0°  126.4°  -44.6°  135.4°   H5                                               
H6     -147.7°  135.5°  -28.0°  149.1°  -34.6°   H6                                        
E7       31.1°  -38.8°  157.7°  -25.1°  145.4°  174.2°   E7                                 
H8       94.8° -136.4°   59.6°  123.0°  -91.9°  -87.6°   98.1°   H8                          
H9     -157.0° -123.3°   42.1° -136.1°  -21.3°   19.1° -157.6°   99.9°   H9                   
E10     -64.0°  -17.7°  147.6°  -30.2°  109.0°  119.8°  -54.6° -152.4°  105.9°   E10           
H11     112.8°  152.3°  -44.4°  138.7°  -73.8°  -72.2°  113.6°   18.1°  -82.6° -163.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3dblf_ :    (SER41)  (SER160)   [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
 d3dbhb_ :    (SER41)  (SER160)   [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
 d3dblb_ :    (SER41)  (LEU162)   [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
 d3dbrd_ :    (SER41)  (LEU161)   [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
 d1yovc_ :    (ASP22)  (GLN147)   [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
 d3dbrb_ :    (SER41)  (LEU162)   [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
 d2nvub1 :  (GLU2040) (LEU2161)   [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]
 d3dbhf_ :    (SER41)  (SER160)   [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |UBA3 |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.111