Protein Concepts Dictionary

Tableau information

Concept source:  d2pdia_  amino acid (a.a.) range (ASN136)(SER290)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASN136)  (GLY151) H1
	  (LYS154)  (ASN160) E2
	  (ASN162)  (LYS172) H3
	  (ALA180)  (GLU185) E4
	  (GLN192)  (GLY203) H5
	  (VAL205)  (SER210) E6
	  (ASP230)  (ASN241) H7
	  (THR243)  (ASN256) H8
	  (VAL258)  (LYS262) E9
	  (THR265)  (LYS274) H10
	  (SER281)  (SER290) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                           
E2      156.5°   E2                                                                    
H3      -57.2°  146.3°   H3                                                             
E4      123.9°  -33.8°  167.3°   E4                                                      
H5      -45.0°  157.1°   16.6° -168.8°   H5                                               
E6      110.6°  -50.2°  149.4°  -19.7°  151.8°   E6                                        
H7      -28.7°  136.6°  -71.8° -115.4°  -55.6° -111.7°   H7                                 
H8      -88.0°  113.1°  -39.0°  146.7°  -44.1°  160.5°   87.4°   H8                          
E9       93.5°  -72.0°  124.5°  -44.8°  127.9°  -25.2° -105.7°  154.9°   E9                   
H10     -88.9°  100.3°  -69.5°  122.2°  -63.1°  141.0°   70.2°  -40.6°  164.4°   H10           
H11     136.9°  -51.9°  106.7°   63.3°  123.2°   61.2° -163.8° -101.4°   61.3° -125.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4g5da_ :   (LYS126)  (ALA268)   [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Leishmania major [TaxId: 347515]
 d1ynpb_ :   (ILE127)  (LEU286)   [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Bacillus halodurans [TaxId: 272558]
 d1frba_ :   (PHE137)  (SER290)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |FR-1 (fibroblast growth factor-induced) protein |Mouse (Mus musculus) [TaxId: 10090]
 d4mhba_ :   (ASP126)  (ALA270)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Yersinia pestis [TaxId: 632]
 d1m9ha_ :   (ASN116)  (ALA260)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |2,5-diketo-D-gluconic acid reductase A |Corynebacterium sp. [TaxId: 1720]
 d3h7ra_ :   (THR133)  (ILE281)   [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d2is7a_ :   (GLU146)  (SER290)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Aldose reductase (aldehyde reductase) |Human (Homo sapiens) [TaxId: 9606]
 d4g5db_ :   (LYS126)  (ALA268)   [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Leishmania major [TaxId: 347515]
 d2pdka_ :   (GLU146)  (SER290)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Aldose reductase (aldehyde reductase) |Human (Homo sapiens) [TaxId: 9606]
 d3up8a_ :   (PRO112)  (GLU255)   [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d3b3db_ :   (VAL119)  (ALA264)   [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d1z8aa_ :   (GLU146)  (SER290)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1xgda_ :   (ASN136)  (SER290)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Aldose reductase (aldehyde reductase) |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1