Protein Concepts Dictionary

Tableau information

Concept source:  d1ty9b_  amino acid (a.a.) range (SER93)(ARG219)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: HEEEHHHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER93)  (HIS101) H1
	  (ALA105)  (TRP111) E2
	  (SER115)  (GLY122) E3
	  (GLY122)  (ARG126) E4
	  (ASN129)  (ARG139) H5
	  (HIS144)  (SER150) H6
	  (GLN160)  (GLU171) H7
	  (CYS183)  (LEU189) E8
	  (SER191)  (ASN197) E9
	  (GLU204)  (ARG210) E10
	  (GLY214)  (ARG219) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                           
E2     -132.7°   E2                                                                    
E3      -47.5°  164.9°   E3                                                             
E4     -106.5°  108.5°   62.6°   E4                                                      
H5      161.6°   28.9° -148.8°  -86.6°   H5                                               
H6      -61.8°  145.7°  -49.3°  -91.2°  132.4°   H6                                        
H7       88.3°  -80.5°   84.5°   62.8°  -86.2°  133.8°   H7                                 
E8       55.6°  -81.8°  102.6°  158.2°  108.4°   89.9° -101.5°   E8                          
E9      132.0°  -21.7°  173.4° -120.1°   33.5°  124.0° -102.1°  -76.5°   E9                   
E10     -49.7°  152.3°  -12.6°   57.0°  143.0°  -61.9°   71.9°  105.0°  174.0°   E10           
E11     117.3°  -51.0°  144.1° -133.1°  -55.9°   95.0° -130.9°   68.4°  -29.5°  156.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1jnwa_ :    (SER87)  (ARG215)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Escherichia coli [TaxId: 562]
 d1ty9a_ :    (SER93)  (ARG219)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Pseudomonas fluorescens [TaxId: 294]
 d1nrga_ :   (SER115)  (GLU251)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Human (Homo sapiens) [TaxId: 9606]
 d1ci0a_ :    (SER94)  (ARG225)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1g76a_ :    (SER87)  (ARG215)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Escherichia coli [TaxId: 562]
 d1t9ma_ :    (SER85)  (TYR211)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Pseudomonas aeruginosa [TaxId: 287]
 d1dnla_ :    (SER87)  (ARG215)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Escherichia coli [TaxId: 562]
 d4hmta_ :    (SER93)  (ARG219)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Pseudomonas fluorescens [TaxId: 294]
 d1ci0b_ :    (SER94)  (ARG225)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d4hmsb_ :    (SER93)  (ARG219)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Pseudomonas fluorescens [TaxId: 294]
 d1ty9b_ :    (SER93)  (ARG219)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |Pyridoxine 5'-phoshate oxidase (PNP oxidase) |Pseudomonas fluorescens [TaxId: 294]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.45